| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1007 |
|---|
| Symbol | |
|---|
| ID | 6461751 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 1041586 |
|---|
| End bp | 1043838 |
|---|
| Gene Length | 2253 bp |
|---|
| Protein Length | 750 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 642727258 |
|---|
| Product | exopolysaccharide biosynthesis-related uncharacterized protein |
|---|
| Protein accession | YP_002017908 |
|---|
| Protein GI | 194336114 |
|---|
| COG category | [D] Cell cycle control, cell division, chromosome partitioning |
|---|
| COG ID | [COG0489] ATPases involved in chromosome partitioning |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.790417 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAAAAG GAAATGCTCT GAGAGAAGCT CTTCCTTTCG GAAAGCCTTC AAAATCTTTT
GACATTGTTG GCTTTATAAA GCGCTATGGT ATCTACATCC TTGTTTTCGG TTCGTTCTTT
TTTGCTATCG CAACTCCTAT TGTTTTTGTT ATAAAGGAGC CATTCTATCA AGTCCATGCT
TTCATGAAAA TAGATCCAGT GATAGCAACC TTGATTACAC AAAAAGCAGA GACATCAATT
ACAAACTATT ATGACCAATA TTCCAATACA CAGGCCCATA CCATGAAAAC CTTTGAGGTG
CTCAAACAAA CGGTTGAGCA ACTGACCCCT CGCGAAAAAG CTGCAGTATT TCCGGCAACT
CTTCCAGCAG AAAAATGTGC AGAAATCCTT GAGCGTGTCA TCGTCATTAA ACCTCTTCAG
GGAACTCACC TGATAGAAAT TATTGCTTCA GGCAACAAGC AGGAAGGGCT GGCTCCACTT
GTCAATAAAC TGATGCTTGT CTATCTCAAA AGACTTCAAA ACATTAATGC AGAATCTGAT
CAGGACCAAT TGAACTCTCT GCGCGCAAAA AAAGAGTTTG TTCTTAATCA AATGAACGCT
TATGAAAAAA GCCTTGATGA GCTGACAAGA GAAATCTCAA CAGCATCATA TTCTGAATCG
TTTAATATGG CATCAAAAAA TACGGAGGAG CTCCAGAAGC TTTATGACAA TGCATTGACC
GATCGCCTTA AAGCAATGAA TAATTTCTGG GCCACCGAGC AGGCAAATAA CGAGTCCCAA
ATACTTTCAT TAGATCCGAT TATTGATGAA ATAGTCATGA ACGATCAATC ACTGCACTTT
ACAAGCTCCT GGACATACCA GCAACTTCAG GAGATGCGGA GCACAACCGA TGGACTGACA
GCAAGCAATC CTGATCGCAT CTACGTTGAA GAACGCATGG GCGCGATGCA AAACTATGAA
AAAAAACAAC GAAAAGAGTT ACAGAATACG GCCAGAGCAA TCGTTCTTGG TAAACGAAAG
CTTGACATGC GTAAATCAAT CATACAGGCT AAATATGATT TTGAAAAATC AAAAAAAACA
GAAGAAGATC TTCAGACTGA ACTTGAAAAA AGCATAAGAG AGTCACAAAG AGTATCTATA
GGCATTCACA GAGGAGAATA TATCAGTGCC GCCTGGAAAC ACAGCAAGGA TATGCTCGAT
ATGCTTGAGC GAAGAATCGC AGAGATAGAA ATCGAAAGAA AAGCTCCATT ACGTATCAGC
ATAGAAACAC ATGCACGCGA ACCCAAATTT CCGGTAAGTT CAAACACCAA CAAACTGTTG
ATGATGCTCC TGGGTTCAGC CTTCTTTATT GTCTGTGGTC CATTTATTGC CTATGAGTTT
TTTGACAACA CCATTCGCCG TCCTGAAGAT ATCAAACAGG CCCTTGGCTA TCTGCCTACC
CAGACGATCG TCAAAACCCC CAAAAAAAAG AACAACCCAA AAGAACTCAG CCTTGGAACT
GATGATTTTC AGCTCCATGC AATCGGAACT CTCGCTGTCA GGTTCTGCCA TGAAAAAGAG
AAGGATAACA GTAGAATACT CCTCTTTACT GGTATTGAAA AAGGGGTAGG ATCATCCTCG
ATCTCCTTCA GTTGTGCTAA AGCGCTTGCC AAAATCGCGC CGAAAGTCCT CTGGATAGAC
GGCGACATCG AAGCAGTTGA TCCTGATCAA TCGGAAGAAT TTTTCCCGAA TCTGCCAGGA
CTTCGCGACT TTCTCAGCAA TACTGACTCA TGGAAAAAGT ACATTGTCTC CACGCCGGAC
GACAATATCG ATATCATTTA TGCCGGAAAC GTCATAAAGG GGATCATTCC CCTTCATCGC
ATCCGAGACT TCCTGAGTGA CGCAAAAAAA GAATACGATT TCATCTGCAT TGATGCATTA
CCGGTACTCC AGAGTAATCT CACCGAACAA TTTGCAATCT ATTCAGATAT CGTTACGCTG
ATTTCTCTTG GGGAAAGTAC GAAATACAAT GCATTGAGAC GTTCAGCCGA ACTGCTGATC
CGCCTGGAAG TTCCAGCCAT TGCTCCTGTT CTGAACTTTG GCGGCAATAA ACAGACCCCC
TCCCTCGATG AATTATTTGA AAATCCACCG GAATTTCTTC ACAAAATAGT TCCAAAAAAA
TTCAAGGATT TTATTAACAA TTCTCCACCA ATTCTTGAAG TCATTGAAAA TATGACGAAA
CCGTTCAGAC GTTTCCGGAA ATCAATACAC TAA
|
|---|
| Protein sequence | MIKGNALREA LPFGKPSKSF DIVGFIKRYG IYILVFGSFF FAIATPIVFV IKEPFYQVHA
FMKIDPVIAT LITQKAETSI TNYYDQYSNT QAHTMKTFEV LKQTVEQLTP REKAAVFPAT
LPAEKCAEIL ERVIVIKPLQ GTHLIEIIAS GNKQEGLAPL VNKLMLVYLK RLQNINAESD
QDQLNSLRAK KEFVLNQMNA YEKSLDELTR EISTASYSES FNMASKNTEE LQKLYDNALT
DRLKAMNNFW ATEQANNESQ ILSLDPIIDE IVMNDQSLHF TSSWTYQQLQ EMRSTTDGLT
ASNPDRIYVE ERMGAMQNYE KKQRKELQNT ARAIVLGKRK LDMRKSIIQA KYDFEKSKKT
EEDLQTELEK SIRESQRVSI GIHRGEYISA AWKHSKDMLD MLERRIAEIE IERKAPLRIS
IETHAREPKF PVSSNTNKLL MMLLGSAFFI VCGPFIAYEF FDNTIRRPED IKQALGYLPT
QTIVKTPKKK NNPKELSLGT DDFQLHAIGT LAVRFCHEKE KDNSRILLFT GIEKGVGSSS
ISFSCAKALA KIAPKVLWID GDIEAVDPDQ SEEFFPNLPG LRDFLSNTDS WKKYIVSTPD
DNIDIIYAGN VIKGIIPLHR IRDFLSDAKK EYDFICIDAL PVLQSNLTEQ FAIYSDIVTL
ISLGESTKYN ALRRSAELLI RLEVPAIAPV LNFGGNKQTP SLDELFENPP EFLHKIVPKK
FKDFINNSPP ILEVIENMTK PFRRFRKSIH
|
|---|
| |