Gene Ppha_0889 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPpha_0889 
Symbol 
ID6461044 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelodictyon phaeoclathratiforme BU-1 
KingdomBacteria 
Replicon accessionNC_011060 
Strand
Start bp928029 
End bp929420 
Gene Length1392 bp 
Protein Length463 aa 
Translation table11 
GC content52% 
IMG OID642727143 
Productputative transcriptional regulator 
Protein accessionYP_002017793 
Protein GI194335999 
COG category[K] Transcription 
COG ID[COG2865] Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATGTTA GAAATCTGAC CGAAGAACTC ATGGGAAAAG ACAAATCCGA TCGCATTGAG 
TTTATTGCAT CATCCCAGGC AGAAGAGTTG ATTGGCCGTG CCGTGTGTGC GCTGCTCAAC
ACCAAAGGTG GTAGCGTTCT GATCGGTGTC GATGATCATG GCCAGGTACT CGGCGAACCA
GGCGAAAAAG ATACTGAAGC ACTCCGTATC TTCCTGCATA AACATGTTAC CCCTCAGGTA
TTGTTCACCG TTACTCTGGA TGATGTTCAG GGAGGCAAGG TCATTTCTGT AGATGTACCG
GAAGGCTCTG ACCGCCCCTA TGTTTTCGAC GGGGCGATTT ACATCAAGAA GGGAACGAAT
ATTCGAGCGG CCGACGCTAC AACAATGCGC GATATGGTGG TACGGCAATC CCGTGAAACC
GAGCGCTGGG AACGTCGCGC TGCTGTCGGC CTTGCCATTG ACGATCTTGA TCGTAAACTG
CTGGATGAGA CGGTACGCAG GGCACAGGAT CGCCGAGGGT ATCAATTTGA AGAGGCTCAC
AACCCTGATA CCGTACTTGC AGACCTGGCC TTGGCCCGGT TCGGTCAATT GACCAATGCT
GCAGATGTGT TGTTTGGCAA GCGTGTTTCA CTGCGCCATC CGCAGACGCG ACTGCGGGCG
GTTCGCTATG AGACGGATCG CGGAGATAAT TTTATTGATG AACAGGTGTA CGAGGGGCCA
GCATTCTACC TCCTGGAAGA AGCGATGAAC TTTCTCAAAC GGCATGTTGC GATTGCTGCC
GAATTCAAGC CGGGACAACT GGCACGAGAA TCTCGACCAC ACTACCCATT CAACTCATTG
CGCGAAGGGT TGGTAAACGC GTTGGTCCAT CGCGACTATG CTGCATTCTC CGGCGGAATT
TCGATTAGTA TTTACCCGGA ACGAATTGAA ATCTGGAATT CAGGGCACCT TTCAATGGGG
CTGACTCCGG AAAAACTCCG GGCTGCTACC CATGAGTCAA TTCTTGTCAA CCCGGATATC
AGCCATGTCT TCTATCTGCA TGAGTTAATG GAACGGGTAG GACGCGGTAC ATTCAAAATT
GTCCAGGAAT GCCGCGAGAT GAAGATGCGC CCCCCGGTGT GGCAGAGCAA ATCATCTGGA
GTCCATCTGA CATTTTTCGG GGCCGGGCAA AAACAAATTT CGATAAAACT CAACGAACGA
CAACAAGCGC TGCTCAATGG GCTGGGTGTC AATGAATCAG TCCGCCTGGA CGAGTACCTT
GAACGAGCAG GTAGCGGCAT CAGTGACCGA CAAGCCCGTC GAGATCTTCG AAATTTAGTG
GATGCCGGAT TACTCGATCC AATTGGAGCT GGTCCTGCAA CGTCCTATCG TCGAACCGAG
GTGGAAATCT GA
 
Protein sequence
MNVRNLTEEL MGKDKSDRIE FIASSQAEEL IGRAVCALLN TKGGSVLIGV DDHGQVLGEP 
GEKDTEALRI FLHKHVTPQV LFTVTLDDVQ GGKVISVDVP EGSDRPYVFD GAIYIKKGTN
IRAADATTMR DMVVRQSRET ERWERRAAVG LAIDDLDRKL LDETVRRAQD RRGYQFEEAH
NPDTVLADLA LARFGQLTNA ADVLFGKRVS LRHPQTRLRA VRYETDRGDN FIDEQVYEGP
AFYLLEEAMN FLKRHVAIAA EFKPGQLARE SRPHYPFNSL REGLVNALVH RDYAAFSGGI
SISIYPERIE IWNSGHLSMG LTPEKLRAAT HESILVNPDI SHVFYLHELM ERVGRGTFKI
VQECREMKMR PPVWQSKSSG VHLTFFGAGQ KQISIKLNER QQALLNGLGV NESVRLDEYL
ERAGSGISDR QARRDLRNLV DAGLLDPIGA GPATSYRRTE VEI