| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0694 |
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| Symbol | |
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| ID | 6461526 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | + |
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| Start bp | 714941 |
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| End bp | 716674 |
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| Gene Length | 1734 bp |
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| Protein Length | 577 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 642726951 |
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| Product | Tetratricopeptide TPR_2 repeat protein |
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| Protein accession | YP_002017606 |
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| Protein GI | 194335812 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCAGCC GACTTCCTGA GTTATTGGTA GCCCGACCTC TCCGGGTGAG CGTCAGCTCT
TTTCTGCATA TGGCGGCAAT TTCCTCTGTT CTTCTCTTTT CGGGCTGTGC ATCCTCCAAA
CCTGTGCTTT CTGGCAGTAC CGTGCCGGAT TCTGTTGTTG AAGCTTCAAA AAGAGAGTTC
GTTGCTGCGT CACTGAAAAG TGCAAAAGGG GACTATCGTG AGGCAGTCGA GCGTTACCGG
AAGCTGCTTC ACGATCAACC CTCAAATGCT GCGATCCATT ATGCACTCTC GAAAGCATGG
GTCGCTCTTG GAGTTCCCGA TTCTGCCCGT CTGTACAGTG AAAAAAGTGT TTTGCTCAAT
CCTCGCAACA AGTACTATAC AGCTTTTCTT GCCTTTCTCT CTCATCAGAT GCATGATTAC
GGTCGCGCAG CCGAACTCTA TCGGCAACTC GCCGTTCTTG ATCCGGGCAG CACGGAACCA
CTTACAAGCC TTGCTCTGGA GTATCTTGCA GTCGATCAAC CTGAAAAATC CCTCGCTGTT
TTTCAGGAAA TTTTGGCACG GGATCCAAAG AATGAGGATG CTCTGGTGCA AATGCTCTTT
GTGGAAATAA AGCTCACACA CTACCAGGAA GCGATAGCTA CCGTGAAGGA GCTTATTGGG
CAAAGCGACA GCAAAGAGAA GTTGCATCTT ACCCTTGGGG AGCTTTATCT GCAGACCCGT
CAGTATGGCC TTGCCTCCAG GACATTCAGG GAGCTTCTCA AGTCGAATCC CGGTTCCGTT
TCGGCATGGC TGGCGTTGTT CGAGGTCTCT GTCCAGTCCG CAAACCATAC CGCTTTCCTT
GAAGATCTCA ACCGGTTTTA CAATACCAAT AACGTAAATC TTCAGAAAAA GATAGAGCTT
GCGAAACTTT TTCTTGTCCG TGCGTCAAGA GAGAGTTCCT TTGTTGATCC TGCGTTCGTC
ATGATTGGCG AAATGAACCG ACGCCATCCC GGCAATGGTC AGATTTATGC GCTTCGTGGC
ATGGCTCGGT TACAAAAGCG GGATGTGGCG GCTGCGGTGA TCGATTACAG GAAGGCTCTT
CTTCTTGAGC CTGGCAGTAT CGAAATATTG GAGGAGCTTG TTGCTCTCCA TCTCATGAGG
AAAGAGTATC GGCAGGCAGG GGAGATACTC TACAAGGCTA AAAAAAGGTT TCCTGTTCTG
ACTTTCAGGC TTCAGGTACA GGAGGGTGAA CTGCTCTTTC AGACAGGAAA GATCAAAAAG
GCAGCACTCT TGCTTGAAAA GGTGTTGTTG ACGAAAGGTG CGCAAAAGGA GAAAGCTCTC
TACCTCCAGG CATCTGGCAC GCTCGCCTTT TGCTATGACA CTCTTGGTTT TACTGATAAA
AGTATTCTTC TCTACAAGAG CATTCTTGAA CGGGAGCCTG ATAACCTTCT TATGATGAAT
AACCTCGCTT ATATTCTCGC TGTGGCGGGA AGAGAGCTGC CGAGGGCCAA AGAGCTTGCT
TTGAAGGTGG TTGAGGCTGA ACCGGCCAAT GCTGGTTATC ACGATACGCT TGGCTGGGTG
CTGTTCAGGT TGGAAGAGTA TGAACGTGCA AGGGAGATTC TGGAAAAAGC AGTTGGGCTG
GATCCTCTTG AGGCTGAAAT AGCAGATCAT CTCAGTCAGG TTTATGAGAA ACTTGGAAAC
CTTGACAAAG CCCTTGAGCT GAAGAAAAAG GCTGCACGCC TGAAAGCCAG GTAG
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| Protein sequence | MRSRLPELLV ARPLRVSVSS FLHMAAISSV LLFSGCASSK PVLSGSTVPD SVVEASKREF
VAASLKSAKG DYREAVERYR KLLHDQPSNA AIHYALSKAW VALGVPDSAR LYSEKSVLLN
PRNKYYTAFL AFLSHQMHDY GRAAELYRQL AVLDPGSTEP LTSLALEYLA VDQPEKSLAV
FQEILARDPK NEDALVQMLF VEIKLTHYQE AIATVKELIG QSDSKEKLHL TLGELYLQTR
QYGLASRTFR ELLKSNPGSV SAWLALFEVS VQSANHTAFL EDLNRFYNTN NVNLQKKIEL
AKLFLVRASR ESSFVDPAFV MIGEMNRRHP GNGQIYALRG MARLQKRDVA AAVIDYRKAL
LLEPGSIEIL EELVALHLMR KEYRQAGEIL YKAKKRFPVL TFRLQVQEGE LLFQTGKIKK
AALLLEKVLL TKGAQKEKAL YLQASGTLAF CYDTLGFTDK SILLYKSILE REPDNLLMMN
NLAYILAVAG RELPRAKELA LKVVEAEPAN AGYHDTLGWV LFRLEEYERA REILEKAVGL
DPLEAEIADH LSQVYEKLGN LDKALELKKK AARLKAR
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