Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ppha_0446 |
Symbol | |
ID | 6462193 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelodictyon phaeoclathratiforme BU-1 |
Kingdom | Bacteria |
Replicon accession | NC_011060 |
Strand | - |
Start bp | 429219 |
End bp | 431876 |
Gene Length | 2658 bp |
Protein Length | 885 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 642726733 |
Product | Tetratricopeptide TPR_2 repeat protein |
Protein accession | YP_002017389 |
Protein GI | 194335595 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3063] Tfp pilus assembly protein PilF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTGCGTTT TCGGCTGCAA TGGATTGACG CCCTGTCAGT CACCTGAGGG TAGCTCTCAA AAGGCGCCTT CGTCTCTCTT CACTTCCGGG GTGATTCTGG CAATTTTTGT CCGCCTTTTC ATCTTTTTCA CGATTGAGTG TAACGAGACG CTCCATGCGG CAGTCAATAG CGATGCCGAC AGGCTCTATT CGGCAAAAAG CTACGAACAA GAGATCATCA AAGCCAAGAA AGCGCTTGAG GTATCGGATT CCAGCCTTGC TCAAACCGAT CTGACGCTCT GCCTGAACAA CCTTGCGGCT CTCTACTTTG TCGAGGGACG GTATGCTGAG GCTGAACCAC TTTACCTCCG GGCTCTCGAT ATTCGCACGA AGCTGCTTGG CCCCGATCAT GCCGATGTGG CCGTGAGTCT CAACAATCTG GCCATGTTAT ACAATGCCGA AGGAAAATAT GCCGAAGCAG AGCCTCTTCT GACCCGTGCG CTTGCCATAC AGGAGCGGAT GTTCGGTTCT CTCAATGCGG AGTTTGCCCT GATCCTGAAC AATATGAGCG AGCTGTACTA TATGCAGGGT CACTATGCAG AGGCTGAGTC TCTCTGCAAA CGCTCGCTTG CCATCCGGGA ACAACTTTTC GGAGAGAATC ACCCCGATAT TGCCCAGAGT CTGAACAATC TTGCAAGAGT TTTCTATGAC CGGGGAAGGT ATGCCGAAGC TGAACCACTC TACCTCCGTG CTCTTGATAT CTGGGAAAAC AATCCAGGCA GCGCCGAGCC AGATGCAGCA AGGGCGCTCA ACAACTTGTC GGAACTCTAC CGCTCTGAAG GCCGGTATGC TGAAGCTGAA CCTCTCTCTT TGCGAGCTCT TGCTCTCCGG GAGCGCGCTT TTGGCCTTGA ACACCCTTTG GTGGCCACAA ACCTGAACAA CCTTGCACTC CTCTATAACA ATCAGGGAAG GTACGCCAAA GCTGAACCGC TCTGCCGCCG GGCGCTGGCC ATCAGGGAGA AGCTGCTTGG CCCTCTTCAC CCTGAAGTAG CCACAAGTCT GAGCAACCTT GCATTAATCT GTAAAAGTGA GGGGAAATAT GCTGAAGCGT TGCCACTGTC GATGCGCGCA CTGGCCATCA GAGAAAAAAA CTTTGGCCTG CAACACCCTT ATGTGGCAAA AAGTATGCAC AATCTTGCAG AGCTGTACGT CAGCATGGGC CGCATGGCAG AAGCTCTTCC TCTCCACGAG GTTGCGCTGG CCACCCTGAC AAAGCTTCTC GGTACCGAGC ATCATGATAC AGGGTTGAGC ATGAACCATC TTGCAGGGCT TTACTTTACC CTCGGACAAT ATCAAAAGGC CGAACCACTC TACCGCCAGG CGCTTGCCAT TCACGATAAG CTTGTTGGCC CTCTTCACCC TGATCATCCT GAAGTTGCAA CGACACTCAA TAACCTTGCA GAATTGATGC GCATTCAGGG CCGGTATGCA GAGGCCGACT CCTGCAACCG CCGTGCGCTG GCCATGAGGG AGAGGCTCTT TGGCCCGGAA CACCCCGATG TTGCCCTGAG CCTCTGCAAC ACAGGCGTCC TGAAAAAAAA TCAGGGAAAA TACGCTGAGG CAGCACCTCT CTTCATACGT TCACTGAAAA TCAGGGAGAA GCTCTTTGGC GCTGTACACC CTGATGTCGC AACGAGTCTG AGTAACCTTG CGGCACTCTA CAAAAGTGAG GGAAGATATG CTGAAGCGTT ACCTCTCTCC CAACGTGCGC TCGCCATCAG GAAAAAAGTA CTCACTCCTG AACACCCTGA TCTGGCAACA AGCCTGAATA ACCTTGGGGT GCTTTACACT ATCCTGGGCA AGTATACACA GGCCGAGGCG CTTTTGACCC GTTCTCTGGC TCTACGGGAG AAGTTGTTTG CTCCTCTTCA CCCCGATATC GCAACAAGTC TGAATAACAT GGCAGAGTTG TTTCGCATTC AGGCCAGATA CCGTGAAGCT GCTCCTCTTT ACCGCCGTTC TCTCGACATA CGGGAAAAGC TCTTTCCTCC CCTTCATCCC GATATTGCCC TGACTCTTAA CAATTTTGCC CTGCTCTACT CCGATCAGGG AGAGTATGCT GTAGCCGAGC CGCTCTATCT CCGAGCTCTC GACATCACGA AGAGGCTCTT TGGCCCGAAA AGCCTTGATA CAGCAATAAG CATGAACAAC CTTGCGGCGC TTTACTCTGC TGGAGGCCGC CATGCCGAGG CCGCGCCTCT TTACAGCGAT GCGATGGCCA TCATGGAGAA TGTTGATGCA ACGCATCACG ACAGCCATAT GGTCGCCCTG AACAACCATG CAGAAGGGTA CCTCGCCAGC AAAGACGATC ATGAGGCTGA GGATTGCGTT AAACGGTCAC TTGCAATCAG GGAGAAGAAT TTCGGCACTC TTCATCCAAG CGTTGCGACC TGCCTGAATA ACCTTGCTGT AATTCTGGAT GCCAAAGGCC AACATGCCGA GGCTGAGCCA CTCTATCTCC GTTCGATCGC TATTGTTGAG TGCGCACTTT CCCCCGATCA CCCCGTTATT GCACAAATTC TTCAAAATCT TGCGCTCCTT TACCGGAAAA CAGGAAGGGA TGGGGCCGCA GGGGAGCTTG AAAAACGAGC CCTGCTCATA ACGGGCAAAA CACGATAA
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Protein sequence | MCVFGCNGLT PCQSPEGSSQ KAPSSLFTSG VILAIFVRLF IFFTIECNET LHAAVNSDAD RLYSAKSYEQ EIIKAKKALE VSDSSLAQTD LTLCLNNLAA LYFVEGRYAE AEPLYLRALD IRTKLLGPDH ADVAVSLNNL AMLYNAEGKY AEAEPLLTRA LAIQERMFGS LNAEFALILN NMSELYYMQG HYAEAESLCK RSLAIREQLF GENHPDIAQS LNNLARVFYD RGRYAEAEPL YLRALDIWEN NPGSAEPDAA RALNNLSELY RSEGRYAEAE PLSLRALALR ERAFGLEHPL VATNLNNLAL LYNNQGRYAK AEPLCRRALA IREKLLGPLH PEVATSLSNL ALICKSEGKY AEALPLSMRA LAIREKNFGL QHPYVAKSMH NLAELYVSMG RMAEALPLHE VALATLTKLL GTEHHDTGLS MNHLAGLYFT LGQYQKAEPL YRQALAIHDK LVGPLHPDHP EVATTLNNLA ELMRIQGRYA EADSCNRRAL AMRERLFGPE HPDVALSLCN TGVLKKNQGK YAEAAPLFIR SLKIREKLFG AVHPDVATSL SNLAALYKSE GRYAEALPLS QRALAIRKKV LTPEHPDLAT SLNNLGVLYT ILGKYTQAEA LLTRSLALRE KLFAPLHPDI ATSLNNMAEL FRIQARYREA APLYRRSLDI REKLFPPLHP DIALTLNNFA LLYSDQGEYA VAEPLYLRAL DITKRLFGPK SLDTAISMNN LAALYSAGGR HAEAAPLYSD AMAIMENVDA THHDSHMVAL NNHAEGYLAS KDDHEAEDCV KRSLAIREKN FGTLHPSVAT CLNNLAVILD AKGQHAEAEP LYLRSIAIVE CALSPDHPVI AQILQNLALL YRKTGRDGAA GELEKRALLI TGKTR
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