| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0400 |
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| Symbol | |
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| ID | 6462335 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | + |
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| Start bp | 386812 |
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| End bp | 387537 |
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| Gene Length | 726 bp |
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| Protein Length | 241 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 642726688 |
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| Product | tRNA pseudouridine synthase B |
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| Protein accession | YP_002017346 |
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| Protein GI | 194335552 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0130] Pseudouridine synthase |
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| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00240651 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGATGAAC AGCGAATAAG GGAGCCTTTA CCTGATGAAG GCAGTTTTCT CCTGATCGAC
AAGCCACTCG ACTGGACGTC GTTTGATGTG GTCGCAAAAA TCAGGAATAC CTACAAGCAG
AGCGGTCTGA AGCGCAAGGT TGGTCATTGT GGAACCCTTG ATCCAAAAGC GACCGGACTG
CTTATCCTGG CGACGGGAAA GAAGACGAAA GAGATCGCAA CGCTCGAAGT GCTCGACAAG
GTTTACGATG GAGCCATAAA GCTTGGCGCC ATGACGGAAA GTCACGATGT TGAAACGATG
GAATATGGCC AGTGCGGCGT GGCACATCTG ACGGAAAGTG AGATTCGCAT CGCAGCCTCA
ACTTTTGAAG GGAGGCGTCA GCAGCAACCC CCCATGCACT CTGCAGCCTG GCATAATGGA
AAACGCCTCT ATGAGCATGC CCGCAAGGGA GTGGTGATCA AAGAGCGAAA AGCAAAAGAG
ATTGTTATTC ACCGTTTTGA GGTTATCCGG GTTGAGCTTC CGATGGTCTA TTTTTCCCTT
CATGTTTCCA AGGGAGCCTA TATCAGGGTT ATTGCCCATG AACTCGGCAC TCTGCTTGGT
GTTGGAGGCT ATCTGGCCTC CCTCACACGA GTCTCTATTG GCCCTTATGC GCTGAGTTCA
GCCAAAACAG TTTCAGACAC CGTTGAAGAT ATTCTTCAGC AGGCATCAAA CGCCCTCCCG
GGGTGA
|
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| Protein sequence | MDEQRIREPL PDEGSFLLID KPLDWTSFDV VAKIRNTYKQ SGLKRKVGHC GTLDPKATGL
LILATGKKTK EIATLEVLDK VYDGAIKLGA MTESHDVETM EYGQCGVAHL TESEIRIAAS
TFEGRRQQQP PMHSAAWHNG KRLYEHARKG VVIKERKAKE IVIHRFEVIR VELPMVYFSL
HVSKGAYIRV IAHELGTLLG VGGYLASLTR VSIGPYALSS AKTVSDTVED ILQQASNALP
G
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