| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0202 |
|---|
| Symbol | |
|---|
| ID | 6462419 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 197704 |
|---|
| End bp | 198243 |
|---|
| Gene Length | 540 bp |
|---|
| Protein Length | 179 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 642726496 |
|---|
| Product | protein of unknown function DUF177 |
|---|
| Protein accession | YP_002017156 |
|---|
| Protein GI | 194335362 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1399] Predicted metal-binding, possibly nucleic acid-binding protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0175804 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCATAAAG AAAAATCGCT GATAGAGATT GGTCTGGTTA CTCTTGTGGA GGGAACCAAT
GAGTTCCATT TCACCTGTAA TGCGGCAGAT TTTGCCGGTC GTCAGTTGGC TGAGGCTGGT
TTTACAAGAG AGATTGCGCT GCATGTGATT GCTGAAAAAA GTGCCGATGA AATAACCATA
ACCATCAACA CTTCGACGCT GGCTGATTTC ACGTGCGATA TCTGCCTTGC ACCAGTATCA
AAAAACCTGA CAGGGACACT TGTGCTCTCC TATATCTTCG GTACCGCTCA TGATGCTGAT
CATGAAGGAG ATGAAGATTA CAGTCGCCTG GACAGAAATG CTGAATCCAT TGACATTACC
GGAGAAGTGT GCGAAACGCT GCTGCTTTCG TTACCCATGA AGGTGACCTG TACGGATAAC
CCTGACTGCA GGCTTTACGG CAGCACAGGA TATATGGAAG AAAATGAAGA GCCTCAGTCC
GGCACGAACA CGCTGTGGCA TGAGTCCCTT GAAAAGCTGA AAAAAAATAT CGTTAACTGA
|
|---|
| Protein sequence | MHKEKSLIEI GLVTLVEGTN EFHFTCNAAD FAGRQLAEAG FTREIALHVI AEKSADEITI
TINTSTLADF TCDICLAPVS KNLTGTLVLS YIFGTAHDAD HEGDEDYSRL DRNAESIDIT
GEVCETLLLS LPMKVTCTDN PDCRLYGSTG YMEENEEPQS GTNTLWHESL EKLKKNIVN
|
|---|
| |