| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0025 |
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| Symbol | |
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| ID | 6463104 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | + |
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| Start bp | 22598 |
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| End bp | 24286 |
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| Gene Length | 1689 bp |
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| Protein Length | 562 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 642726327 |
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| Product | ribonuclease, Rne/Rng family |
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| Protein accession | YP_002016999 |
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| Protein GI | 194335205 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0274691 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAAGA GTTCGAATAA GCAGTTGCTG ATGAACAAAA CCGGTGACGA GATACAGGTT
GCACTGGTTG AGGAGGGACG TCTGGTTGAA TTGATTATTG AGCGTCCCGA AAGCAGGAGG
AGTATTGGTG ATATTTATCT TGGCAGGGTA CATAAGGTTG TGGAGGGGCT TAAGGCGGCC
TTTGTTGATA TCGGCCAGAA GTCGGATGGC TTTTTGCATT TTTCCGATGT CGGCACAACA
AATGAGGATT ATCGTGCGCT GATTGAGGAT GATGATGATG ATGAGAATGG CGGTGTGGAT
GATGGCGATG ATGCGCCGCA GGGTGCACGC AGTGGTGATG AACCGGCGGC GGGTGCAAAT
GTTAAGTCGG CTGCCCGCAG TGGCAGCAAG GCCCCTTCGG CAGATGATCA GGATCGGGCT
GAGAAAAGGC AGTCATACAC ACAGATGATT GCTGGCAAGC TCAAGCCGAA TGACTCCATT
CTGGTGCAGG TTATCAAGGA GCCGATCAGC AGCAAGGGTT CCCGCCTTAC TTCTGATATT
ACGATTGCCG GGCGCTTCAT GGTGCTGCTT CCTTTTGGTG GAGGGCAGGT AGCTGTCTCC
CGCAGGGTTG TTGCCCGCAA AGAGCGTTCA AGACTGAAAA AGCTGGTGCG CTCCATGCTT
CCTGAAGGTT TTGGGGCCAT TATCCGCACT GTTGCTGAAG ATCAGGAGGA GACGTTGCTG
AAGCAGGATC TTGAGAAGCT TCTTGCCAAG TGGACGCAGA TTGAGGAAAA GCTGCAGGAT
GCTGCCCCTC CCCAGTTGAT TTTCAAGGAG GATACGATCA TATCGAGTGT TTTGCGTGAC
TCGCTTACCT CTGATGTCAC GGAGATTGTT GCCAATTCAC AACTTATTTA CAAGGAGACG
CTGAACTACA TTCAGTGGGC TGCGCCTGAG ATGGTGAAAA ATGTCACCTT CTATCAGGGA
AAACTTCCCT TGTTCGAAGG CTATGGCATT GCCAAGGATG TTGAGTCGAT CTTTTCGCGC
AAGGTATGGC TTAAGTCGGG TGGCTATATC ATTATTGAGC ATACCGAGGC GATGGTGGTT
GTTGATGTCA ACAGTGGAAG GTATGCAGCC AAGCGGGAGC AGGAGGAGAA CTCTCTGAAA
ACCAATCTTG AGGCGGCGCG GGAGGTTGTG CGGCAGTTGC GGCTGCGTGA TATCGGCGGC
ATTATTGTTG TTGACTTTAT CGATATGCTT GATCAGAAAA ATGCCAAGAA GGTTTATGAT
TCCATGAAAA CCGAATTGCG CAATGATCGG GCGAAATCAA ATATTCTTCC CATGTCTGAT
TTTGGTATCA TGCAGATTAC CAGGGAAAGA ATTCGTCCAA GTTTGATGCA GCGGATGGGC
GATCAGTGTC CTGCATGTGG AGGTACCGGG GTGGTGCAGG CAAGGTTTAC GACCATTAAC
CAGATTGAGC GCTGGCTCAG GAAGTATGCG CTTCAGCACA ATATGAAATT TCAGCAGCTT
GACCTTTATG TCAGTCCGAC TGTGGTTGAG CCGTTGCAGA ACAGTGACAT GAAAACGGAG
TTGAAGTGGT TTCTCCAGCA CATGCTTTTT GTTCAGGTGA AGCCGGATGA AAGTCTCAGA
AGCGACGATT TCCGCTTCTA CAGCAGAAAA AATAACAAGG ATATTACCGC CGAATATGGC
GATATCTAA
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| Protein sequence | MKKSSNKQLL MNKTGDEIQV ALVEEGRLVE LIIERPESRR SIGDIYLGRV HKVVEGLKAA
FVDIGQKSDG FLHFSDVGTT NEDYRALIED DDDDENGGVD DGDDAPQGAR SGDEPAAGAN
VKSAARSGSK APSADDQDRA EKRQSYTQMI AGKLKPNDSI LVQVIKEPIS SKGSRLTSDI
TIAGRFMVLL PFGGGQVAVS RRVVARKERS RLKKLVRSML PEGFGAIIRT VAEDQEETLL
KQDLEKLLAK WTQIEEKLQD AAPPQLIFKE DTIISSVLRD SLTSDVTEIV ANSQLIYKET
LNYIQWAAPE MVKNVTFYQG KLPLFEGYGI AKDVESIFSR KVWLKSGGYI IIEHTEAMVV
VDVNSGRYAA KREQEENSLK TNLEAAREVV RQLRLRDIGG IIVVDFIDML DQKNAKKVYD
SMKTELRNDR AKSNILPMSD FGIMQITRER IRPSLMQRMG DQCPACGGTG VVQARFTTIN
QIERWLRKYA LQHNMKFQQL DLYVSPTVVE PLQNSDMKTE LKWFLQHMLF VQVKPDESLR
SDDFRFYSRK NNKDITAEYG DI
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