| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Paes_1714 |
|---|
| Symbol | |
|---|
| ID | 6460152 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prosthecochloris aestuarii DSM 271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011059 |
|---|
| Strand | - |
|---|
| Start bp | 1872667 |
|---|
| End bp | 1873896 |
|---|
| Gene Length | 1230 bp |
|---|
| Protein Length | 409 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 642725703 |
|---|
| Product | P-type conjugative transfer protein TrbL |
|---|
| Protein accession | YP_002016379 |
|---|
| Protein GI | 194334519 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3846] Type IV secretory pathway, TrbL components |
|---|
| TIGRFAM ID | [TIGR02783] P-type conjugative transfer protein TrbL |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.00575847 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATCCAG GTATTCTTAC TGATACTCTT AATCATTTTC TTGATGCATT TACTGCGAGT
TGGGGATATT TACAACCATC GATTAATTGG TTGATAGGAA TACTCCTTTC CATCGAAATT
CTATTGTTAG GATTATGGTG GGCATTGAGC GGTGGGGAGC AGCTTGTAAA TGTCATGAAA
AAGCTTCTCT TCTTAGGCTT TTGGATGTGG TTGGTTACAG GTTTTCCATA TATAAGTCAC
GCATTTGTTA GTTCGCTCAT AGAGGCTGGA AAAATAGCTG GGAATAGTAC CGGTGATGGG
CCTAGTTTAT TTAATCCATC AAAAATACTT TGGTATGGCA TTGATATAAC CAAGCCTTTG
GGAGCGCAAT TAAAAAAATC AGGTTTTAAT CTGGTAAATG CTTTTGTTAT TGCTTTGGCG
TATTTGTTGA TAATAATTGC ATATATGATT ATTGCGTGGC AAGTGTTTTT TGCTGTTTTA
GAGTATTATT TATTGATGGC GGTTGTAAGC ATTTTGCTTC CCTTTGGTTT TGTTGAAAAA
ACAAGATTTT TGGCTGAAAA AGCGATTTCA GCAGTTATTT CTTCAGGTAT TAAATTAATG
GTTTTGGCTT TTATTCTGTC TGTAGGTGAG CCGATTATAA AGGGATTCGA TTTGCCGGAG
GGATTATGGT CTTTTGAGGA AATTTGGTCA ATACTATTGG TTTCCGGTGG TATTGCTTTC
CTGGCATGGA ATGCTCCTAA TGTCGCATCA GGGTTGTTGT CTGGGAGTCC GAGTTTGTCG
GCTAATTCGG CGGCGAGTCA GGCGGGGCAG GCAGCTATGG TTGCGGGGGC TGCTGTGTCG
GCCGGGGTGG CGGCGACTGG TGCTGCGGCG TCGGTGGCGG GAGGGGCGGT CAAGATGGCT
TCTGCTGCTA CAACTGGTGC TGATATTGCT GGCGGGGCAG CGGCAATGGG TGGTGCCGGG
CCGATTGGCA CTGCTGCAGC GAGGTTGAAA GGTGGTGCTG AGGCTGTTGG TAAGGGGGTC
TGGAACCGGA CTGGTGGTAA GGTGGCAGAT TTTATGAAAC AGCATGCTGC AGAAGGGTCG
AAAGAAGGGT ATGTGAATAC CGGCGGAAAA TTGCCGAAGA GTTCGAAAAG TTCGGAGGGA
CCAGCGTGGG CTTCGGCTAT GATACAGTCT TTGCAGAATG CCCGGCAGGA GAGTTCCCGG
TCGGCAAAGG GTAATGGCGA TAATTTATAA
|
|---|
| Protein sequence | MHPGILTDTL NHFLDAFTAS WGYLQPSINW LIGILLSIEI LLLGLWWALS GGEQLVNVMK
KLLFLGFWMW LVTGFPYISH AFVSSLIEAG KIAGNSTGDG PSLFNPSKIL WYGIDITKPL
GAQLKKSGFN LVNAFVIALA YLLIIIAYMI IAWQVFFAVL EYYLLMAVVS ILLPFGFVEK
TRFLAEKAIS AVISSGIKLM VLAFILSVGE PIIKGFDLPE GLWSFEEIWS ILLVSGGIAF
LAWNAPNVAS GLLSGSPSLS ANSAASQAGQ AAMVAGAAVS AGVAATGAAA SVAGGAVKMA
SAATTGADIA GGAAAMGGAG PIGTAAARLK GGAEAVGKGV WNRTGGKVAD FMKQHAAEGS
KEGYVNTGGK LPKSSKSSEG PAWASAMIQS LQNARQESSR SAKGNGDNL
|
|---|
| |