| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Paes_1188 |
|---|
| Symbol | |
|---|
| ID | 6458902 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prosthecochloris aestuarii DSM 271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011059 |
|---|
| Strand | - |
|---|
| Start bp | 1296817 |
|---|
| End bp | 1297791 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 642725179 |
|---|
| Product | Polyprenyl synthetase |
|---|
| Protein accession | YP_002015864 |
|---|
| Protein GI | 194334004 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0000116702 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.535135 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGATATTA AAGAGGTAAC CGTATCGGTC TCTCAGGAGC TCGAAACCTT TCGTCAGCGC
TATAAAGTTG CGCTGAAAAG TGATAACAGC CTGATTGACA AGGTTATGCG CTACATTCTC
AAGCAGCAGG GCAAGCAGGT TCGCCCGCTT CTGGTCATGC TCGGCGCCAA AGTGTGCGGC
GGCGTAGCAG ACGCCTCTTA CAGGGCGGCG ATAATGGTCG AGTTGCTTCA CTCGGCAACA
CTCGTACACG ATGATGTGGT TGACGGGGCT GAGATGAGAC GGGGATTGGC TTCGATCAAT
GCCGTGTGGA AAAATAAGAT CGCCGTACTC ATCGGTGACT ACATGCTTTC CAAGGGTCTG
CTTTATTCTC TTGATCATAA AGATTACCGA TCGCTCCATA TGGTGTCGGA TGCAGTGCGC
AGGATGAGCG AGGGTGAGAT TCTGCAGATT CAGAAAACAC GAAGCCTCGA TATTTCCGAA
GAGGATTATC TCAAGGTTAT TTCTGATAAA ACCGCCTCGT TACTGTCGAC TTCATGCGCA
ATGGGGGGGG CGAGCGTGAC TGATGATGAG GAAAAGATCG AAGCGCTCAG GAATTACGGT
GAGTTTCTCG GGCTTGCTTT TCAGATCCGC GACGATCTGC TTGATTATAC CGGGGATTCA
AATAAAACCG GTAAACAGCT CGGAATAGAT ATTCAGGATA AAAAAATCAC ACTTCCGCTC
ATCTATGCGC TTGGCCAGGC TGAACGTTCC GAGCAGAAAA GAATTCGTTC AATTCTCAAG
AGTTCGAAGA AACGTGCTAT GAAAAGCGGG GAGGTGATGG ATTTTGTTCG AAAAAGCGGG
GGACTGGAAT ATTCTTCAGA GGTTGCGGAA GGATTTGCAT CAAAAGCGAC TGCGGCACTT
GAGGTTTTTG ATGATTCCGA AGCTCGCAGA TCCCTGGAGC TTCTTGTCGA CTTTGTGATG
AAGCGTCAAC ATTAA
|
|---|
| Protein sequence | MDIKEVTVSV SQELETFRQR YKVALKSDNS LIDKVMRYIL KQQGKQVRPL LVMLGAKVCG
GVADASYRAA IMVELLHSAT LVHDDVVDGA EMRRGLASIN AVWKNKIAVL IGDYMLSKGL
LYSLDHKDYR SLHMVSDAVR RMSEGEILQI QKTRSLDISE EDYLKVISDK TASLLSTSCA
MGGASVTDDE EKIEALRNYG EFLGLAFQIR DDLLDYTGDS NKTGKQLGID IQDKKITLPL
IYALGQAERS EQKRIRSILK SSKKRAMKSG EVMDFVRKSG GLEYSSEVAE GFASKATAAL
EVFDDSEARR SLELLVDFVM KRQH
|
|---|
| |