| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Paes_1176 |
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| Symbol | |
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| ID | 6459926 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prosthecochloris aestuarii DSM 271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011059 |
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| Strand | - |
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| Start bp | 1284730 |
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| End bp | 1286199 |
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| Gene Length | 1470 bp |
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| Protein Length | 489 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 642725167 |
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| Product | RNA polymerase, sigma 54 subunit, RpoN |
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| Protein accession | YP_002015852 |
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| Protein GI | 194333992 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.720482 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.377405 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCAGACT TTAAGCTTCA GCAAAGCCAG AGGGCCCAGC TTTCTGCACA GCAGATTCTT
TCGAGTCAGC TTCTGCAGCT TCCCCTTCTT AACCTTGAGC AGCGGATATA CGATGAGCTG
CAGGAAAACC CGCTGCTTGA ACTGATCGAA GAGAAGAACG AATCGGTCGA TGAAACAGGT
GAGCAGAGCG GAGACGACGG CGATGACGGT GATGGAGAAG GGATGTTCGA CTCTGTTGAT
CGTTTTGAAG CCAGGGATGA AAAGCGCCCT GAAAAGAACG AGCAGCCTAA AGAGAGCCAG
GAAGGGGTAT TGCATTTTAC CGTCGATACG ACACCCAAAG AGAATTTTAT CCAGGCGATT
CAGCAGGACT CTTTCGAAGA GCGAATGCTC AGAGATCTTT CTCTCCGGGA GGAAATCGGT
TCAACAGAAC TGCTTATTGC ATCGGAAATT CTCGGTAATC TTGATGATGA CGGTTATCTT
CAGGACGGTC TGGATATTGT TGCCGATGGC TTGTTGACCA ATCATGGCGT TGATGTTGAG
CCGCGTGACA TTCAACGCGT GCTGCATATC ATCCAGCGGA TGGATCCCCC GGGGATTGCC
GTAGCTTCGC TTCGCGAGCG TCTGCTCGTA CAACTGGAAC TGAACCAGGC AGCATCGGGA
TCAGGAGGGA CAGCCATTAT TGCCAAAAAG CTTCTTGACA GCTATTTTGA TGATTTTCTC
AACAACCGCT ATGAAAAAAT CATCAAAAGG ATGCAGATCA GGCCTGAACA GCTTGAAGCC
GCGATTAAGG AGATTGCTGC GCTGGATCCC CACCCTTTTG TCGTCTATCA GGATACGGGG
GACTATATCA TGCCTGATTT TATCGTGACC TATGAAAACG GGCGTCTGAC CGCAGCGCTC
AATGATCGAA GTAATCTTTC TGTTCAGGTT TCGGACGCCT ATCGCGACGT CCTGAAAAAC
AGGAAAATTC CACGAGGCGA CAAGCAGTTT GTTCGTCAGA AACTTAACCG GGCGAAGGAA
TTCGCAAGTG CTATAGAGCA GCGACGTCAT ACTTTGTTGA GCGTTATAGA TGCTCTGATG
CAGTTTCAGT ACGAATTTTT TGTTTCAGGA CCATCGATGC TGGTTCCTCT GGGAATGAAG
GATGTTGCGG AAAAATCCGG TTTTGATCTT TCAACGATAA GCAGAGCGGT CAACGGCAAA
TATGTTCAGA CCCGTTTCGG GACCTTTGAG TTGAAATACT TTTTCAGTGG AGGGACAACG
ACGGACGAAG GCGAGGAGCT CTCAACCAAG ATCGTCAAAC AGTACCTTCA GGAGATGGTA
AGTGCTGAAG ACTCAAAAAA ACCTCTGAGC GATGACAGAC TTGCACAGAT GCTGGAGGAA
AAAGGCATAC GGATAGCCCG CAGAACGGTT GCAAAATACC GTGAACAAAT GCAAATTCCA
GTAGCAAGGT TAAGAAAGAA AATATTTTAA
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| Protein sequence | MPDFKLQQSQ RAQLSAQQIL SSQLLQLPLL NLEQRIYDEL QENPLLELIE EKNESVDETG
EQSGDDGDDG DGEGMFDSVD RFEARDEKRP EKNEQPKESQ EGVLHFTVDT TPKENFIQAI
QQDSFEERML RDLSLREEIG STELLIASEI LGNLDDDGYL QDGLDIVADG LLTNHGVDVE
PRDIQRVLHI IQRMDPPGIA VASLRERLLV QLELNQAASG SGGTAIIAKK LLDSYFDDFL
NNRYEKIIKR MQIRPEQLEA AIKEIAALDP HPFVVYQDTG DYIMPDFIVT YENGRLTAAL
NDRSNLSVQV SDAYRDVLKN RKIPRGDKQF VRQKLNRAKE FASAIEQRRH TLLSVIDALM
QFQYEFFVSG PSMLVPLGMK DVAEKSGFDL STISRAVNGK YVQTRFGTFE LKYFFSGGTT
TDEGEELSTK IVKQYLQEMV SAEDSKKPLS DDRLAQMLEE KGIRIARRTV AKYREQMQIP
VARLRKKIF
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