| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Paes_0683 |
|---|
| Symbol | trpA |
|---|
| ID | 6459919 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prosthecochloris aestuarii DSM 271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011059 |
|---|
| Strand | + |
|---|
| Start bp | 727573 |
|---|
| End bp | 728376 |
|---|
| Gene Length | 804 bp |
|---|
| Protein Length | 267 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 642724676 |
|---|
| Product | tryptophan synthase subunit alpha |
|---|
| Protein accession | YP_002015377 |
|---|
| Protein GI | 194333517 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0159] Tryptophan synthase alpha chain |
|---|
| TIGRFAM ID | [TIGR00262] tryptophan synthase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.550176 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCATA ACAGAATTAC CCCTTTGATG AACGAGCAGA AAAAGCTGCT CATAGCTTAT
TACATGCCCG AGTATCCTGT GGCCGGAGCG ACGCTGCCTG TGCTTGAGGC ATTGCAGAAC
AGCGGTGCTG ATATTATTGA ACTTGGAATG CCATACTCTG ATCCTATCGG TGACGGACCG
GTTATCCAGG ATGCGGCTCA GGTTGCTATC AGAAACGGGG TGCATATAGG AAGCTTGCTT
GATCTTGTCA GAAAAGCCAG AGCAGGAGAG GGGTGCGTGA AAATAACCGT TCCGATCGTT
CTTATGGGCT ACTGCAATCC GCTTATTGCC TATGGCGGAG ATTGCTTCCT GAACGACGCT
TCCGAGGCAG GCGTTGACGG TTTGCTCATC CCGGATCTTC CTCCCGAGGA AGCTGAAGAT
TTCCTCTCAA GGGCTAAAAG CTTCGGGTTG TCTGTGGTTT TTCTGATTTC ACCGGTCACG
CAGCCAGAAC GTATTCGTCA GATCGATGCG CTGTCGACAG ATTTTTCCTA CTGCCTTGCC
GTTAATGCCA CAACCGGAAC AGGAAAACTC GATGAAGCGG AGAGGGACGC TGATATCGAG
AGCTATCTTC AGCGTGTCAG TGAGCATACC AGAAAGAAAT TTGTTGTGGG ATTTGGTATC
AGGAATCGGG CCAGGGTGGA AAAGATGTGC GCTCTGGCCG ATGGAGCGGT TGTTGGAACG
GCACTTCTTC AAGCGATTGC CGGTGCCGCT ACTCCTTCAC AAGCTGCGTC CATGGCGGCC
GGTTTCTGGA AAACATTGCG ATGA
|
|---|
| Protein sequence | MAHNRITPLM NEQKKLLIAY YMPEYPVAGA TLPVLEALQN SGADIIELGM PYSDPIGDGP
VIQDAAQVAI RNGVHIGSLL DLVRKARAGE GCVKITVPIV LMGYCNPLIA YGGDCFLNDA
SEAGVDGLLI PDLPPEEAED FLSRAKSFGL SVVFLISPVT QPERIRQIDA LSTDFSYCLA
VNATTGTGKL DEAERDADIE SYLQRVSEHT RKKFVVGFGI RNRARVEKMC ALADGAVVGT
ALLQAIAGAA TPSQAASMAA GFWKTLR
|
|---|
| |