Gene Rpal_5296 details

Gene Information

• Locus tag: Rpal_5296
• ID: 6412997
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: +
• Start bp: 5714478
• End bp: 5715131
• Gene Length: 654 bp
• Protein Length: 217 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 642715185
• Product: ABC transporter related
• Protein accession: YP_001994257
• Protein GI: 192293652
• COG category: [V] Defense mechanisms
• COG ID: [COG1136] ABC-type antimicrobial peptide transport system, ATPase component

Plasmid Coverage information

• Num covering plasmid clones: 29
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTGATCG TCTCCGGTCT CACCAAATCC TATGTGTCCG GTCAGGACCG CGTCGCTGTG 
CTGCGCGGTG TCGACCTTGC GGTCGAGCCC GGCGAGAGCG TGGCGCTGAC CGGCGAATCC 
GGCAGCGGCA AATCGACCTT GCTGCATCTG ATCGCCGGCC TCGATCAGCC CGATGGCGGC 
GCCATCACCT TCGGCGAAGC GACGATCTCG ACGATGCCAG ACGCCGAGCG TGCCGCCTTT 
CGGCGCGAAC GGCTCGGGCT GGTGTTTCAG CAGTTCAACC TGATCCCGAG CCTGACGGTT 
GCCGACAATC TCGTATTCCA GTCCCGTCTC GCCGGCCGCC ACGATGAGGC GTGGCGCACC 
GAGCTGATCG AGCGGCTCGG GCTCGGCACC TTGCTCAAGC GCTACCCCGA GCAACTCTCT 
GGCGGCCAGC AGCAGCGCGT CGCAATCGGC CGCGCGCTGG CGATCAAGCC GCTGCTGCTT 
CTCGCCGACG AGCCGACCGG CAATCTCGAC GAATCAACCG CCGACGACGT GCTGTCGCTT 
GCCACCGATC TGGTTCACCG CACCGGCTGT GGCTTCCTGA TGGTGACGCA CAGCGAGCGT 
CTCGCCGGTA TGCTCGATCG CCGGGTGCAT CTGCACGCGG GGCTGATCCA TTGA 

 

Protein sequence

MLIVSGLTKS YVSGQDRVAV LRGVDLAVEP GESVALTGES GSGKSTLLHL IAGLDQPDGG 
AITFGEATIS TMPDAERAAF RRERLGLVFQ QFNLIPSLTV ADNLVFQSRL AGRHDEAWRT 
ELIERLGLGT LLKRYPEQLS GGQQQRVAIG RALAIKPLLL LADEPTGNLD ESTADDVLSL 
ATDLVHRTGC GFLMVTHSER LAGMLDRRVH LHAGLIH