Gene Rpal_5286 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_5286 
Symbol 
ID6412987 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand+ 
Start bp5702818 
End bp5703363 
Gene Length546 bp 
Protein Length181 aa 
Translation table11 
GC content66% 
IMG OID642715176 
ProductCarboxymuconolactone decarboxylase 
Protein accessionYP_001994248 
Protein GI192293643 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.0750237 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCCTGA ATCTGCTTTC GCCTGGCGAA ATGAGCGCCG AGCAACGCGC CATCTATGAC 
GAGTCGATCG CCAGCAAGCG CGGCAGCCCG CCGCCGCCGA TGATGGCGTG GCTGGCGAGC 
CCGGAGATGG CCCGGCACGC CACGCGGCTC GGCGCCTTCC TGCGCTACGA CACCTCTCTG 
ACTGCGGCGG AGTCGGAGCT GGCGATCCTG GTCACCGCTC GGCACTGGAC CGCGCAGTTC 
GAATGGTACG CGCACAAGAA GATGGCTCTC GACGGCGGCC TCGATCCAAA GATCATCGAC 
GCGATCCGCG ACCGCCGCAC GCCCACCTTC GACGATCCGA AGGCGCAGGT GATCTACGAC 
GTCGCCCGTG CCTTGCATGA AGCCAAGGGG CTGCCGCAGC CGCTGTATGA CGAAGCGATG 
CGGCTGCTCG GCGAGCGCGG TCTGGTCGAA GTGATCGGGC TGTGCGGCTA CTACACGATG 
GTGTCGATGA CGCTTAACGC CTACCAGTTC CCGCTGCCCG ACGGCGAGAC GCCGGAGCTG 
TCGTAA
 
Protein sequence
MRLNLLSPGE MSAEQRAIYD ESIASKRGSP PPPMMAWLAS PEMARHATRL GAFLRYDTSL 
TAAESELAIL VTARHWTAQF EWYAHKKMAL DGGLDPKIID AIRDRRTPTF DDPKAQVIYD 
VARALHEAKG LPQPLYDEAM RLLGERGLVE VIGLCGYYTM VSMTLNAYQF PLPDGETPEL 
S