| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_5229 |
|---|
| Symbol | |
|---|
| ID | 6412929 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 5640713 |
|---|
| End bp | 5641627 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 642715119 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | YP_001994192 |
|---|
| Protein GI | 192293587 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.23572 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAAT CGGCCGTCAC GATCGAGCGC ATCCGCACCT TCGTTCGCAT TGCCGAGCGA
GGCAGCCTGT CGGCGGTCGC GCGTGATCTC AACGTCGGCC AGTCCACCGT CACCCGGCAG
CTGCAGGAGC TCGAGGCCGC GGTCGGAGCG CCGCTCTTGA GCCGGACCAC CCGCCGGGTG
ACGCTGACCG AGGAAGGCAG CCGCTATTAC GCGCGCTGCG TCCAGATCCT GCGGCTGCTG
GAGCAGGCCG GCGACGAAGC GCTCGGCGCT TCCGGGGCCC CCGCCGGCAC GATCCGGATC
TCCTGCACGG CCTCGTTCGG CGTGCTGCAC GCCAGCCGGC TGATCTTCGC GTTCCAGGAT
CGCTATCCGG ACATCGGGAT CGACTTCGGC CTCACCGATC AGCGCGTCGA TCTGGTGCGC
GAGGGCGTCG ACCTGGCGAT CCGGCTGGCT CCACTCGCCG ACAGCTCATT GAAACTGCGG
ACGCTCGGCC ACAGCCATCG CCTGCTGGTC GCCTCGCCGG ACTATCTGGC GGCGCACGGC
AGGCCGACGT CGCCGCAGGA TCTGTCAAAC CATCAGGGGG TGCGCATGGT GAACGTCGCC
GGCAGCGACC TGCTGGTCTT GCAGGGACCG GATCAGGAGA TCCACCGGGT GCCGTTCGGC
GGCCGGCTCA GGGTCGATCA CGGGCTCGCA GCACGGGAGG CGATGATCGC CGGTCGCGGC
ATTGCCGCCA CTCATCGCTG GCTGGTCGCC GACTTGCTGG CGGCGGGACG GCTCGAGGTG
CTGCTGCCGG AGTACAGGCT GCCGCCGGTG CCGCTCAATC TGTTGATCGT GCCGGAGCGC
GCCGGCATCG CGCGCGTGCG GCTGCTGATC GACTTCCTGG CCGAGCAGAT CGGGAGCGTG
CCCGGAATCG CGTGA
|
|---|
| Protein sequence | MDKSAVTIER IRTFVRIAER GSLSAVARDL NVGQSTVTRQ LQELEAAVGA PLLSRTTRRV
TLTEEGSRYY ARCVQILRLL EQAGDEALGA SGAPAGTIRI SCTASFGVLH ASRLIFAFQD
RYPDIGIDFG LTDQRVDLVR EGVDLAIRLA PLADSSLKLR TLGHSHRLLV ASPDYLAAHG
RPTSPQDLSN HQGVRMVNVA GSDLLVLQGP DQEIHRVPFG GRLRVDHGLA AREAMIAGRG
IAATHRWLVA DLLAAGRLEV LLPEYRLPPV PLNLLIVPER AGIARVRLLI DFLAEQIGSV
PGIA
|
|---|
| |