Gene Rpal_5188 details

Gene Information

• Locus tag: Rpal_5188
• ID: 6412888
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: +
• Start bp: 5590648
• End bp: 5591319
• Gene Length: 672 bp
• Protein Length: 223 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 642715078
• Product: putative exported protein of unknown function
• Protein accession: YP_001994151
• Protein GI: 192293546
• COG category: [A] RNA processing and modification
• COG ID: [COG5178] U5 snRNP spliceosome subunit

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 0.705252
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCTATCT CGAACCGCAG GTTGCGCCGG CGTCTCGTGC CGCGCCGCGT CGGCATTTTC 
ACAGCCGCGA TGCTCGCGAC AGCCCTGCTC GGCATCCCCG CGCTGGCGCA GAATTACGCG 
CCGCCGCCGG CCGACCGGCC ACCGCCACCT CCACCAGCGC GCACGGACAA TCCGGGCCTG 
GTCGATGAAA TCCAGAAGCT GCTGAAGACG CCGTCGTCGC TGCTGCCATC GACGTCGCTG 
CTGCCGTCGT TCGGCAGCGA CAGCAAGGAC GCGCCGCCGC CTCCTCCGCC GCCCCCTCCG 
CCACCACCCC AACAGAGTCC GGCAGGACCA CCTGCATCGT CACAGACCGC TCCATCACCG 
CCTCCTCCTC CCGGCGGCAG GCCGCCGTCA CCTCCGCCTG CGCCGCCTCC TCCGCCTGCT 
CCAGCCGCAT CGGCACCGAT CGTGCCGTCG ATGGTCAGCG GAAGGCAGGT TTGTCCCGCG 
GCGCCGGGTA GCGGTCCCGA CTGCCAGGCC GCGGCCGACA TCCTGTGCCG GTCGAAGGGC 
TATGGCGGCG GCAAGAGCCT CGGCGTCGAT GCGACCGAGA AGTGTTCGGC CAAGGTGCTG 
ATCCCCGGAC GGCCGCGCGA ACCAGGCGAT TGCCGCACGG AAAATTTCGT CACACGGGCA 
TGGTGCCAGT AG 

 

Protein sequence

MPISNRRLRR RLVPRRVGIF TAAMLATALL GIPALAQNYA PPPADRPPPP PPARTDNPGL 
VDEIQKLLKT PSSLLPSTSL LPSFGSDSKD APPPPPPPPP PPPQQSPAGP PASSQTAPSP 
PPPPGGRPPS PPPAPPPPPA PAASAPIVPS MVSGRQVCPA APGSGPDCQA AADILCRSKG 
YGGGKSLGVD ATEKCSAKVL IPGRPREPGD CRTENFVTRA WCQ