| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_5160 |
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| Symbol | |
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| ID | 6412860 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 5559160 |
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| End bp | 5560047 |
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| Gene Length | 888 bp |
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| Protein Length | 295 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642715050 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_001994123 |
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| Protein GI | 192293518 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.528553 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCAATG CGTGGATCCG CCCGAACCTG TCGCCGGCAC GCGCTGCGAT CGCCGCAAGC
CTGCTCTGTG GCCTGGTCAC GATGGCCCGC GCGGATCAGC CCGCCGGCAA TGCCGGCGTG
CAGGTCGTCG TCGCCAAAGC CACCAGCGCC TGCTTCTCCG ACAAGGTTCG GGTTACCGGC
TTCGTGGTGC CGCGCAAGGA AGCGGTGGTG ATCGCCGACA GTGACGGCCG TGTCACCGAC
GTGCTGGTGC GCGAGGGCGA TGTCGTCACC GACAATCAGG ATCTCGTCCG AGTGACCGGT
CCCGGCGGCA ACAGGACGCT GAAAGCACCG GCCGCGGGCC TGATCACCGA AGTGCGGACC
ATCGCCGGTG CGCCGGCTTC GCCGCTCGCC GGACCGATGC TGCGGATCGC GGTCGGCAAC
GAACTCGAAG TCGATGCCGA AGTGCCGAGC ATTCACGCCC TCAAGGTCGG CCCCGGTGCC
TCCGCGCGGA TCAGCCGCGA CGACGGCACC GAACTCACCG GCACGGTGCG GCTCGCTGCA
CCGCAGATCG ACCGCAAGAC TCAATTCGGC CAAGTGCGGA TCGCGCTCGC TGCGTCACCC
GCCCTGAAGG TCGGCATGTT CGTGCGCGTC ACCATCGATG CGCGACGGAG CTGCGGCGTC
GCGATCCCGC GCTCGGCAAT CGATCACTCC ACCGTGCAGG TGGTGAAGGA CAACGTCGTC
GAAACCCGCT CGGTCAAGGT CGGCCTGACC TCCGATCATG CGATCGAGGT TATCGACGGG
GTCCGCGAAG GCGAGATCGT GGTCGCCGAC GCCGGCACCT CGCTGCACGA CGGCGACCGC
ATCAAGCCGA TCTTCACCGA CGATTCCGAG CGATCGAAAG CGCGCTGA
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| Protein sequence | MINAWIRPNL SPARAAIAAS LLCGLVTMAR ADQPAGNAGV QVVVAKATSA CFSDKVRVTG
FVVPRKEAVV IADSDGRVTD VLVREGDVVT DNQDLVRVTG PGGNRTLKAP AAGLITEVRT
IAGAPASPLA GPMLRIAVGN ELEVDAEVPS IHALKVGPGA SARISRDDGT ELTGTVRLAA
PQIDRKTQFG QVRIALAASP ALKVGMFVRV TIDARRSCGV AIPRSAIDHS TVQVVKDNVV
ETRSVKVGLT SDHAIEVIDG VREGEIVVAD AGTSLHDGDR IKPIFTDDSE RSKAR
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