Gene Rpal_5108 details

Gene Information

• Locus tag: Rpal_5108
• ID: 6412802
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: -
• Start bp: 5490967
• End bp: 5491506
• Gene Length: 540 bp
• Protein Length: 179 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 642714993
• Product: Tetratricopeptide TPR_2 repeat protein
• Protein accession: YP_001994072
• Protein GI: 192293467

Plasmid Coverage information

• Num covering plasmid clones: 30
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCCGACC TGATGCACAG TGAACTGACG ATGTCCGGCC CGGAGCAGTC GCTATTGGCC 
GGGGCGCTGC TCGGCGCTGG TCTGCCGGCG GATGCGCATC GGCATCTTGA ATTGGCGGGG 
CGCGACTATC AGAGCGAGGC GCTGGCGGAG CAACATCTGC GCGAGGCTCA TCTGCTGGCA 
CCCGACCACG CCGCAGTGCT GATTGGGTTG TACCGTTTCT ATTTCTACAA GGGCCGCCTC 
GGCGAGGCGC TAGAAGTGGC GCAGGCCTGC CTGTGCAAGG CTGCCCGCGA CAACGGCCTC 
GCATCCGACT GGCGCAAGGT GCGGCGCGGC GATGCCGAGT TTTCCAGCTA CTCGGCGGTG 
CTGCCGCGGT TCTATCTGTT CGCGCTGAAG GCCTACGCGT ATTTGCAGAT GCGGCTCGGC 
CAGCTCGACG AAGGTCGCGC GGCGGTCGAA AAGCTGCTCG AGCTCGATCC GACCGACAAG 
GTCGGCGCCG CCGTGCTGCT CGATGTATGG CGGCGGATAG GGCAGGACGA TGACGACTGA 

 

Protein sequence

MPDLMHSELT MSGPEQSLLA GALLGAGLPA DAHRHLELAG RDYQSEALAE QHLREAHLLA 
PDHAAVLIGL YRFYFYKGRL GEALEVAQAC LCKAARDNGL ASDWRKVRRG DAEFSSYSAV 
LPRFYLFALK AYAYLQMRLG QLDEGRAAVE KLLELDPTDK VGAAVLLDVW RRIGQDDDD