| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_5059 |
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| Symbol | |
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| ID | 6412753 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 5442525 |
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| End bp | 5443490 |
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| Gene Length | 966 bp |
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| Protein Length | 321 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642714944 |
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| Product | PDZ/DHR/GLGF domain protein |
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| Protein accession | YP_001994023 |
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| Protein GI | 192293418 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTTCGC TCCCCGAATG GAATGTCCCG GCCGCGATTC GGCCTCGCTC GGCCGATTTC
GGCTTCGATC TCGATCGCGC GTTGTCTGCG GTGGTCGGGC TGCACGCGAT CATTCCAGCC
GATGCCTACA CCGCCGGTAC GCTCGGCACC GAGCGCGCCG GCAACGGCGT GCTGATCGAC
GACGGTCTGG TACTGACCAT CGGTTATCTG ATCACCGAAG CCGAAACGGT GTGGCTGCAT
CTCGGTGACG GCCGCGTCGT TGAGGGCCAT GCGCTCGGAT TCGATCAGGA GAGCGGCTTC
GGCCTGGTTC AAGCGCTCGG CCCAATCGAT CTGCCGCCGC TACCGCTCGG CCGCTCTGCT
TTCGCCAAGG CGGGCGAGCG CGTCATTATC GGCGGCGTCG GTGGCCGCAC ACGGTCGGTG
GCCGGCCGCA TCGCCACACG TCAGGAATTC GCCGGCTACT GGGAGTATCT GCTCGACGAT
GCGATCTTCA CCGAGCCGTC GCATCCGAAC TGGGGCGGCA CCGCGCTGCT GTCGGCGACC
GGCGAACTGA TCGGCGTCGG CTCGCTGCAG ATCGAACGCA GCGGCTCGAA CGAGCATTAC
AATTTGAGCG TGCCGATCGA TCTGCTGCCA CCTGTGCTGA GCGATCTTCG GAAGTTCGGC
CGGCCGAACA AGCCGCCGCG GCCGTGGCTG GGGCTGTATT CGACCGAGAT CGAAGACAAG
GTCGTGGTGG TCGGAATTGC GCCGAAGGGC CCGGCGGCGC GCGCCGAGCT GAAGACCGGC
GACGTGATCC TCGCAGTCGC GGGCGACAAG GTGACCAGTG AAGCGGAGTT CTATCGCAAG
GTCTGGGCAC TGGGCACTGC AGGCGTAGAG GTGCCACTGA CGCTGTTCAG CGGCGGCGCC
ACCTTCGACG TGGTGCTGCA TTCCTCCGAC CGCGCCAAGT TCCTCAAGGC ACCGCGGCTG
CATTGA
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| Protein sequence | MPSLPEWNVP AAIRPRSADF GFDLDRALSA VVGLHAIIPA DAYTAGTLGT ERAGNGVLID
DGLVLTIGYL ITEAETVWLH LGDGRVVEGH ALGFDQESGF GLVQALGPID LPPLPLGRSA
FAKAGERVII GGVGGRTRSV AGRIATRQEF AGYWEYLLDD AIFTEPSHPN WGGTALLSAT
GELIGVGSLQ IERSGSNEHY NLSVPIDLLP PVLSDLRKFG RPNKPPRPWL GLYSTEIEDK
VVVVGIAPKG PAARAELKTG DVILAVAGDK VTSEAEFYRK VWALGTAGVE VPLTLFSGGA
TFDVVLHSSD RAKFLKAPRL H
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