| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4917 |
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| Symbol | |
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| ID | 6412603 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 5286689 |
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| End bp | 5289025 |
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| Gene Length | 2337 bp |
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| Protein Length | 778 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642714794 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_001993881 |
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| Protein GI | 192293276 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.705684 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAGACC GATCCGACGC CCGCCGCCGA GCCCATCAGG CTTTCCTGAC CACTAGCTGC
GTTGTTGCTG TCCGTGTCGC TGTGGGCTCC GCGGTGTGCT GGACCGCACT GGCCCCGCAA
ATTGCCGCCG CGCAGTCGCA GTCCCAGCAG CTGCCGAGCG TCACCGTCGA CGCTCCGAAA
CGTGCGGTCG CGACGCGGTC TGCGCCGGCG CCGCAACGAA GCACCAATGC CCCAATCAGA
AGGCAGGCGC GCCGCACGCC GATTGCTGCG CCGCCGAGCC CGGCCGAGCG TGCAGCGGCC
GCGGCCGTTC AACTGAACGA AGCCAAGCTC GGCTACCGCG CGATGCCGAG CCCGACGACG
CTGCGGACCG GCGCGTCGCC GCTCGACACC TCGCAAGCCG TGGCCGTCGT GCCGGAGCAA
GTGCTCAAGG ATCAATTGCC GCGCAATCTC GATGATGCGC TCGCCAATGT CAGCGGCGTC
ACCCAGACCA ACACGTTGGC GGGTTCGTTC GATGCCGTGA TCCGGCGTGG CTTCGGCGAA
AACCGCGACG GTTCGATCAT GCGCAACGGC ATGCCGTTGG TGCAGGGACG CAGCCTCGGA
CCCACGGTCG AAAGCGTCGA GGTGCTGAAG GGGCCGGCAT CGCTGCTGTA CGGGATTCAG
TCGCCGGGCG GCGTCGTCAA CACCATCAGC AAGCGGCCGG AGCTGTATCA GCACGGATCG
CTCACCGTGA TCGGTTCGAG CTTCGGCGGC GGCCACAACG GCGCCAATGC GATTTTCGAC
CTGACCGGTC CGCTCGGCAC CCAAGGCCTC GCCTATCGGG TGATCGGCTC GGGACTCGAT
GAGGACTATT GGCGCAACTT CGGCGCCAAC CGCGAGCGAC TGCTGGCGCC GTCGCTGGCT
TGGTATGGTG AGTCCACCAC GGTGCAGTTC TCTTACGAGC ACCGCGATTT CAGCTATCCG
TTCGACCGCG GCACCGCCTT CGTCAAGGGC GCCCCGCTGG CGATTCCGGC GACGCGCCGC
CTCGACGAAT CATTCAACCG GACCTGGGGG CAATCGGATC TGCTGCAGGC CTCGGTCGAG
CAGCGCCTCG GCGACACCTG GAAGCTGACC ACCGCCTACA GCTACAACCG CGAGATCTAC
GAGGCCAACC AGCTTCGGAT CACCGCCGTC GATCCAGTCA CCGGGATCGA AAAGCGAAGC
AACGACGGCA CCCATGGTGC GCTCGCTTAT GTCGGCTACG GCACGTCCTA TCTGCGGAGC
GATCTTTGGC TCGGCGGCCT GCGCCACGAA GTGCTGATCG GCGGCGAGGC GCAGCGACGG
CTGATCTATC GCCAGGATCT GATCCGGCAG GCGACACCGA CGTTCAATTT CTACAATCCA
GTCTACGGCC TTGTCGGTCC GGGCACGACG GTCTCAGCGT CGGACAGCGA CCAGACCGAT
CGGCTGGAGA CCCGCGCGGT CTTCGCACAG GATACGCTGC ACCTGACCGA TCGGTTCTCC
CTGATCGGCG GCGTGCGCTG GATGGACTAC GAGCAACTCG CCGGCCGCGG TCGGCCGTTC
ACTGCCAACA CCGATCTCAG CGGCAACAAG CTGCTGCCGC TCGGCGGCGC CGTCTTCAAG
CTCACCGATC AAATCTCGCT CTACGCCAGC TACACCCAGT CGCTGCAGCC GACCTCGACC
ATCGCGCCAT TGCAGAACAG CGGCGGTCTG GTCATCGGTT CGAACATCGC CCCCGAGGAA
GGCACGCAAT ACGAGGCGGG CCTGAAGTTC GATCTCAACA AGCGGCTGTC CGGCACGCTG
GCGGTCTACG ACATCGACAA GAAGAACGTG CTGGTGTCGC AGTTCAACGC AGCGACCGGC
CTCAACGAAT ATCGCGCGGC CGGCAAAGTT CGATCGCGCG GCGTCGAGTT CGATGTCACC
GGCCGGCTGA CCGACGATTG GAGCACGATC GCCTCCTATG GTTACACCGA TGCCATCGTC
ACCGACGATC CCGCACTCTC CGGAAAGCGG CTGCAAAACG TCGCGATGAA CACCGCGTCG
CTGTTCCTGG TCTATGATTT CGGGACGGCG CTGCCGGGAC GGCTGCGCCT GGGCGGCGGC
GCCCGCTACG TCGGCGACCG GCCGGGGGAC AGCGATAACT CGTTCGTGTT GCCGTCCTAC
ACGGTGGCCG ACCTGTTCGC GACCTATGAG GTCAAATACG GGCGGACGCC GGTGATCTAC
CAGTTCAACG TCAAGAACCT GTTCGACAAG GTGTACTACC CATCGGCCGT GAATACCCTG
AACGTCGCGC TTGGTGATGC CCGGCGCTTC TCGCTGGCCG CGACCGTCAA GTTCTAG
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| Protein sequence | MPDRSDARRR AHQAFLTTSC VVAVRVAVGS AVCWTALAPQ IAAAQSQSQQ LPSVTVDAPK
RAVATRSAPA PQRSTNAPIR RQARRTPIAA PPSPAERAAA AAVQLNEAKL GYRAMPSPTT
LRTGASPLDT SQAVAVVPEQ VLKDQLPRNL DDALANVSGV TQTNTLAGSF DAVIRRGFGE
NRDGSIMRNG MPLVQGRSLG PTVESVEVLK GPASLLYGIQ SPGGVVNTIS KRPELYQHGS
LTVIGSSFGG GHNGANAIFD LTGPLGTQGL AYRVIGSGLD EDYWRNFGAN RERLLAPSLA
WYGESTTVQF SYEHRDFSYP FDRGTAFVKG APLAIPATRR LDESFNRTWG QSDLLQASVE
QRLGDTWKLT TAYSYNREIY EANQLRITAV DPVTGIEKRS NDGTHGALAY VGYGTSYLRS
DLWLGGLRHE VLIGGEAQRR LIYRQDLIRQ ATPTFNFYNP VYGLVGPGTT VSASDSDQTD
RLETRAVFAQ DTLHLTDRFS LIGGVRWMDY EQLAGRGRPF TANTDLSGNK LLPLGGAVFK
LTDQISLYAS YTQSLQPTST IAPLQNSGGL VIGSNIAPEE GTQYEAGLKF DLNKRLSGTL
AVYDIDKKNV LVSQFNAATG LNEYRAAGKV RSRGVEFDVT GRLTDDWSTI ASYGYTDAIV
TDDPALSGKR LQNVAMNTAS LFLVYDFGTA LPGRLRLGGG ARYVGDRPGD SDNSFVLPSY
TVADLFATYE VKYGRTPVIY QFNVKNLFDK VYYPSAVNTL NVALGDARRF SLAATVKF
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