| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4733 |
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| Symbol | |
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| ID | 6412419 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 5095670 |
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| End bp | 5097739 |
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| Gene Length | 2070 bp |
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| Protein Length | 689 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 642714612 |
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| Product | proton-translocating NADH-quinone oxidoreductase, chain L |
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| Protein accession | YP_001993699 |
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| Protein GI | 192293094 |
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| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1009] NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit |
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| TIGRFAM ID | [TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes)
[TIGR01974] proton-translocating NADH-quinone oxidoreductase, chain L |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0478983 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGCATC TGCTTCCCTT CGTCCCGGTG CCGGCGCTGC TCGGCTTCGT GTTCCTCTCG
CTGATCCCGG CACCGCTGTC GCGTGCCGCG GTGATCGCGC TCGGCGTCGG CGCCGCGGTA
CTGCCGGCGA TCCTGTTCTT CCCGGTGGCG CTGTCCTGCA TCGAGGGCGT GTGCGTTGCC
GGCGCGACGG TGCCGATCCT GTCGATCGAT ACCGGTGTGT TCGTCGCGCA GATCGCGATG
TCGATGGATC CGCTCAGCAT GGTCACCGGC GGCACCGTGG TGCTGGTCGG CGCGCTGGTG
CTGATCTATT CCGGCGCCTA CATGGCATCC GAGCCGCTGC AGGATCTGCG CCGTTTCTTC
GCGGTGATGA ACCTATTTCT GGCCGGGATG CTGGCGGTGG TGTTCGCCGC CGACGTCATC
CTGCTGTTCC TGGGCTGGGA AACCATCGGC CTGTGCAGCT TCATGCTGAT CGCGTTCTAC
GACCGGTTGC CGAAGGCCGT GGCCGCGGGA CGCAAGGCGC TGATCACCAC CCGCGTTGCC
GACAGCCTGC TGCTCGCCGG CTTGATGATG CTGTTCTTGA ACGCCGGCAC CACGCGGCTC
GACGGCATGC TTGCCGCGGT GCCGTCGATT GATCCGTGGC GGCTGGCGCC GATCGCCGGG
CTGATTGCGC TGGGCGCGCT CGGCAAGTCG GCGCAGATCC CGTTCCACAC CTGGCTGCCG
AGCGCGATGG CCGGGCCGAC GCCGGTGTCG GCACTGCTGC ATTCGGCCAC TATGGTCGCC
GCCGGTGTGA TCCTGCTGGC GCGCCTCGCG CCGCTGTTCG CCGCAGCGCC CGAGATTTCG
GCGATGGTCG CGATGCTCGG CATCCTGACT GCGGCGCTCG GCGCGCTGGT CGCGCTGATC
CAGGCCGACG TCAAGAAGCT GCTGGCCTTC TCGACCATGA GCCAGATCGG CTTCATGGTG
CTGGCGCTCG GGCTCGGCGC GCCGGCGGTA GCGCTGTCGC ATTTCGCCAT CCACGCGGCG
TTCAAGTCGC TGCTGTTCCT CAGCGCCGGC GTGATGAGCC ACGCAGCGGG TGGCTCGACC
GCGATCGAAG CGCTGCGCGG CTCTCGTTAT CGTCAGCCGC TGGCATTCTG GAGTTTCGCC
ATCGGCGCCG CTTCGCTCGC CGGCCTGCCG GTGATCACCG CGGGCTGGTA CTCGAAGGAA
GCGGTGCTGG CTGCAGTTTG GAGCAGCGGG CCTTGGGGCG TGCCGCTGTG GCTGCTCGCC
GCCACAGCAG CGGTGCTCAC CGGCGCCTAC GCGTTCCGGG TCGTGTTCGT CGCAGCGAGC
CAGACCGCCG ATCTCGCCGC GCCGCCATGG GGCGGTCTCG CGGTCGTGGT GCCGCTGTCG
GTCCTCACCT TCGTCGCCGT GGTTGGCGGC ATGTCGGTCG GCGCGCTGAT CAGCTTCACC
GGCGGCGCGC CCGAGCACAT TCCGTTGGTG CCGGCGCTGC TCGGCGCTGC CGCCCCGATC
CTCGGTGTAG TCCTGGCGCG ATGGCTGGTC AGGCATCCGC AAGAGTTGGA GCGTCTGGCG
ACACGGATGC GGCACATCCG GATCTTCCGC GTCGACGTGC TGTATTATTA CTACTTCGTC
CGGCGCTTCC GCCGCGTCGC CACGGTGCTC GGCAATGCCG AAGGCACTGA AGCAGTTGCC
GACGCGGTTG CGCGGCGCCG CGAGGGCGTT GACGTGCCCG GACTCGTCAC CGACGATCCG
CTCGGTCGCG GCGCCAGCCA GGTGCGCGGG ATTCGCACCG ACCTGATCAC GCGAGCGACC
GACGGCCAGA CTCCGGTGGT GCGCATGGTG GCCGGCGACC CGGTCGGTCG GCTACTCATC
GTCGTGGCCC GGCTGTTCGT CGGATTTTTC GTGGCGCGAT TCAATCCGGA CCGGATCGAT
CGCGCCTGGA TGGGTTTGGC CAGCGGTGCC GGCCACGCCT GGGCGCTGGT GCGGCTGACG
CAGACCGGCC GCGTCCGCGA TCACTCGCTG TGGATCGCGC TCGGTTGCGC GGGACTTCTA
TTGTTTGCCT GGGGGACGTC ATGGCGTTGA
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| Protein sequence | MAHLLPFVPV PALLGFVFLS LIPAPLSRAA VIALGVGAAV LPAILFFPVA LSCIEGVCVA
GATVPILSID TGVFVAQIAM SMDPLSMVTG GTVVLVGALV LIYSGAYMAS EPLQDLRRFF
AVMNLFLAGM LAVVFAADVI LLFLGWETIG LCSFMLIAFY DRLPKAVAAG RKALITTRVA
DSLLLAGLMM LFLNAGTTRL DGMLAAVPSI DPWRLAPIAG LIALGALGKS AQIPFHTWLP
SAMAGPTPVS ALLHSATMVA AGVILLARLA PLFAAAPEIS AMVAMLGILT AALGALVALI
QADVKKLLAF STMSQIGFMV LALGLGAPAV ALSHFAIHAA FKSLLFLSAG VMSHAAGGST
AIEALRGSRY RQPLAFWSFA IGAASLAGLP VITAGWYSKE AVLAAVWSSG PWGVPLWLLA
ATAAVLTGAY AFRVVFVAAS QTADLAAPPW GGLAVVVPLS VLTFVAVVGG MSVGALISFT
GGAPEHIPLV PALLGAAAPI LGVVLARWLV RHPQELERLA TRMRHIRIFR VDVLYYYYFV
RRFRRVATVL GNAEGTEAVA DAVARRREGV DVPGLVTDDP LGRGASQVRG IRTDLITRAT
DGQTPVVRMV AGDPVGRLLI VVARLFVGFF VARFNPDRID RAWMGLASGA GHAWALVRLT
QTGRVRDHSL WIALGCAGLL LFAWGTSWR
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