| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4504 |
|---|
| Symbol | |
|---|
| ID | 6412188 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 4848867 |
|---|
| End bp | 4849826 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642714386 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001993475 |
|---|
| Protein GI | 192292870 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0392] Predicted integral membrane protein |
|---|
| TIGRFAM ID | [TIGR00374] conserved hypothetical protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCGGT TTCTGCTTTC AGCAGCCAAG ATCCTGGTTT CAGCGGCGCT CTTGTATCTA
GCGCTCCGGA AGACCGATTT TGCCGCCCTC GCCGCACGGA TCGACGCGAC CAGCTTGGGC
TGGCTGGCGG CCGCGGTCGC TGCCACGATC TTCCAACTGT TCGTCAACGC CGTGCGCTGG
CGCGCGATCG GTGCGTGCTG CGAAGCACCG CTGACGACCG GACGATCGAT GCGCTACGCG
ATGATCGGTT CCTTCTTCAA TCAGACGTTG CCGTCCGCAA TTGGCGGTGA CGCGGTGCGG
GTCTGGCTAC TTGCGCGGGC CGGCGCCGGT TGGCGCGCCG CCACCTATTC GGTGTTCGTC
GATCGGGCGA CCGGATTGAT CGCCTTGTCG GCGATCATCT TTGTGACACT GCCGTGGACG
CTGCGATTGA TCGACAATGC GGACGGCCGT CTCGGATTGA TGCTGCTGGA TTTTGCCGCA
CTCGGCGCCG GCGTCGTGTT CCTGACCTTG CCGTTTCTGC GGTTTGGCTT GCTCGACCGG
ATCTGGGCCA CCCGCCATAT GCGTGGCTGC TCCGAAGTCG CCCTGAAAGC TCTGTCGTCT
CCGAAAAGCG CGGCGATCCT GATCGCCACT TCTTTTATCA TTCCGATCCT TGCGGTGATG
ATCGCCTGGT GCGTGGCTCA AGCGATCGAA TCGCCAAGCA GCTTCGTGCA ACTGTTAGAA
CTCGTCCCGC CGATCATGCT GATCACCATG ATCCCGATTT CGATCGCCGG CTGGGGCGTG
CGCGAAGCCA GCATGGGATT GGCGTTCGGT TACGCGGGCC TCAACCCCAG CGACGGCGTC
GCAGTGTCGC TGCTGTTCGG CGCCGTGTAT TTCGTCGTCG GCGGCATCGG TGGGCTGATC
TGGATCATGA GCGCCGAAAA AGCCGCAAAG GGCGATGCGC CGATCGAGGT TCCGGAATAG
|
|---|
| Protein sequence | MRRFLLSAAK ILVSAALLYL ALRKTDFAAL AARIDATSLG WLAAAVAATI FQLFVNAVRW
RAIGACCEAP LTTGRSMRYA MIGSFFNQTL PSAIGGDAVR VWLLARAGAG WRAATYSVFV
DRATGLIALS AIIFVTLPWT LRLIDNADGR LGLMLLDFAA LGAGVVFLTL PFLRFGLLDR
IWATRHMRGC SEVALKALSS PKSAAILIAT SFIIPILAVM IAWCVAQAIE SPSSFVQLLE
LVPPIMLITM IPISIAGWGV REASMGLAFG YAGLNPSDGV AVSLLFGAVY FVVGGIGGLI
WIMSAEKAAK GDAPIEVPE
|
|---|
| |