Gene Rpal_4454 details

Gene Information

• Locus tag: Rpal_4454
• ID: 6412138
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: -
• Start bp: 4785764
• End bp: 4787635
• Gene Length: 1872 bp
• Protein Length: 623 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 642714336
• Product: flagellar hook-associated protein FlgK
• Protein accession: YP_001993425
• Protein GI: 192292820
• COG category: [N] Cell motility
• COG ID: [COG1256] Flagellar hook-associated protein
• TIGRFAM ID: [TIGR02492] flagellar hook-associated protein FlgK

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTCTCG GAGACGCACT CGCCATCGCA ATGGCCGGCC TTCGGGTGAA CCAGGCGACA 
ATGTCGCTGG TGTCATCCAA CGTTGCCAAC GCCGAGACGC CCGGCTATGT CCGCAAGACG 
GTCAACCAGT CGGCGGTGAA TGCGGGGGAG ACCGGCACCA GCGTCAAGGT CGTCGGCGTC 
GATCGTCAGC TCGACGACTA CATCCTGGCG CAGCTTCGAA CCGAGACTTC GGGAGGGGCC 
TACGCGTCGT TGCGATCGGA CTTCCTGAAG CAGCTGCAGG GGCTATTCGG CGATCCGAAC 
TCCAGCGGGA CGCTCGAAAA TTCCTACAAC GGCCTCACCA CCGCGCTGCA GGCGCTCGCC 
ACCAGTCCGG ACAGCACGTC TGCACGGATT GCTGTGCTGA ATGCCGCGCA GGCGATTTCG 
AGCAATCTGA ATTCGACATC GAACGGCATT CAAACGCTGC GCGCAGGGTG CGAAACCGGC 
ATCGCCGACG CGGTGACCAC CGCGAACAAC TTGATGCAGC AGATCGCCAA CATCAACACC 
CATATCCAGA CCAATCCGCT CGGTGGCACA TCGACCGATG CGGCCACCTC GGCGATGCTC 
GATCAGCGCG ATCAGGCGAT CAATCAGTTG TCGCAACTGA TGGATATCCG CGTCGTCACC 
AATGGCGCCA ATCAGGTGAC CGTGTTCACC GGATCCGGCG TGCAGCTCGT CGGCATGGAA 
GCGGCGAAGC TGACCTTCAA TGCGCAGGGC ACGGTTTCGC CGACCACGAT GTGGAATCCG 
AACACGGCGA TCAGCGATCT CGGCTCGATC CGGGTCGGCT ACGCCAACGG CTCCTCTTCC 
GATCTGACCA GCTCGCTGAA ATCCGGTAAG TTGGCCGCCT ATGTCGAGTT GCGCGACAAG 
ACCCTTGTCC AGGCCCAGAC CCAGCTCGAT CAGTTTGCGG CCTCGCTGTC GAGCGCGCTT 
TCAGACAAGA CGACGGCCGG CACGGCTGTC ACCTCCGGCA CCCAGGCGGG TTTCAGTCTC 
GATCTGTCGT CGATGAAGAC CGGAAACACC GTCAACATCT CTTACACCGA TACGCTGACC 
GGTGCGCAGC ATACGGTGAC GGTGGTGCGG GTCGATGATC CGTCGGTGCT GCCACTGCCG 
CAGAACGCCA CCGCCGATCC GAACGACTAC GCGGTCGGGA TCGATTTCTC CGGCCTGTCC 
GGCTCGGTGG TGTCGCAGCT CAACGCTGCG CTCAACAGCC GTAACCTGCA GTTCAGCGGC 
ACCGCGCCAA ACATCACGGT GCTGAACAAC GCAGGCTTCT CGACGATTAC CGCGGCCTCA 
GTCACCAGCA CCGAGACGTC GCTGACCGGC GGCACCGCAT CGGTACCGCT GTTCAATGAC 
AACGGCGCGG CTTACACCGG GGCGATCAAC GGCTACGGCA GCCAGATGAC TGGCTACGCG 
CAGCGGATCT CGGTCAACGC CGACCTGATC AAGGATAACT CCCGGCTGGT GGTGTATTCG 
ACCTCGCCGC TCACGGCCGC GGGCGATACC ACGCGGCCGG ACTTCCTGGT CAAGCAGCTC 
AACACCAGCA AGTATCTGTA TTCGGCGAAG ACCGGCATCG GTTCGGACGC TGCACCTTAC 
AAGGGCACGC TGCTGAGCTA TCTGCAGCAG TTCGTCAGCC AGCAGGGCTC CAATGCGGCG 
GCGGCGCAAC AACTGTCCGA GGGGCAGAAC GTGGTGCTGA ATACGCTGCA GCAGAAATTC 
TCGACGTCCT CCGGCGTCAA CATGGACGAG GAGATGGCGC ATCTGCTGTC GCTGCAGAAC 
GCCTACGCGG CGAACGCGCG GGTGATGTCG ACCATCAACC AGATGTATCA GTCCCTGATG 
CAGGCGATTT GA 

 

Protein sequence

MSLGDALAIA MAGLRVNQAT MSLVSSNVAN AETPGYVRKT VNQSAVNAGE TGTSVKVVGV 
DRQLDDYILA QLRTETSGGA YASLRSDFLK QLQGLFGDPN SSGTLENSYN GLTTALQALA 
TSPDSTSARI AVLNAAQAIS SNLNSTSNGI QTLRAGCETG IADAVTTANN LMQQIANINT 
HIQTNPLGGT STDAATSAML DQRDQAINQL SQLMDIRVVT NGANQVTVFT GSGVQLVGME 
AAKLTFNAQG TVSPTTMWNP NTAISDLGSI RVGYANGSSS DLTSSLKSGK LAAYVELRDK 
TLVQAQTQLD QFAASLSSAL SDKTTAGTAV TSGTQAGFSL DLSSMKTGNT VNISYTDTLT 
GAQHTVTVVR VDDPSVLPLP QNATADPNDY AVGIDFSGLS GSVVSQLNAA LNSRNLQFSG 
TAPNITVLNN AGFSTITAAS VTSTETSLTG GTASVPLFND NGAAYTGAIN GYGSQMTGYA 
QRISVNADLI KDNSRLVVYS TSPLTAAGDT TRPDFLVKQL NTSKYLYSAK TGIGSDAAPY 
KGTLLSYLQQ FVSQQGSNAA AAQQLSEGQN VVLNTLQQKF STSSGVNMDE EMAHLLSLQN 
AYAANARVMS TINQMYQSLM QAI