| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4237 |
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| Symbol | |
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| ID | 6411921 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 4549203 |
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| End bp | 4550861 |
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| Gene Length | 1659 bp |
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| Protein Length | 552 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642714119 |
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| Product | dicarboxylate/CoA ligase PimA |
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| Protein accession | YP_001993208 |
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| Protein GI | 192292603 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | [TIGR03205] dicarboxylate--CoA ligase PimA |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCCATC CCGGTGAGCA GTACTATCCA CCCGGCGTTC GCTGGGATGC GGTGATCGCG
AGGGGGACAT TGCCGGAGCT GCTGGCGCAG GCCGCGAAGG AGTACAGCTC GCGGCCGGCG
CTGGAGTTTC GTGATCGGCA GATCACCTAC ACCAAGCTCG AAGCGATGGC CGAGACCGCG
GCGGCCGCGC TGCTCGCAGC AGGCTATGGC CGCGACTCCT CGGTCGCGCT GTATCTCGGC
AACACCCCAG ACCATCCGAT CAATTTCTTC GGCGCGCTGA AGGCCGGCGC CCGCGTGGTG
CATCTGTCGC CGCTCGACGG CGAGCGGGCG CTATCGCACA AGCTCAGCGA CTCCGGCGCG
CGGGTGCTGA TCACAACCGA TTCCGCCGCG CTGCTGCCGA TGGCCGAGAG GTTTCTTGCC
AAGGGCCTGC TCGACCGCCT GATCGTGTGC AGCGATGCCA GCTGGGGCGA GTCCGCGACG
CCGCTGGCGC CGCTGCCCAG CGATCCGCGG GTGATTACTT ACGCCGACTT CATCAAGGAC
GCGTCCAAAC CCGCGGCCTG GCCGGCGATT TCGCCGGACG ATATCGCGCT GTTGCAATAC
ACCGGCGGCA CCACCGGGCT GCCGAAGGGC GCGATGCTGA CCCATTCCAA CCTGACCTCG
GCGGTGTCGA TCTACGACGT CTGGGGTCTG GTGCGCGCCA ATAGCGGCGG CATTCATCGC
GTGATCTGCG TGCTGCCGCT GTTTCACATC TACGCGCTCA CCGTGATCCT GCTGCGCTGC
CTGAAGCAGG GCGACCTGAT CTCGCTGCAT CAGCGCTTCG ACGTCGCCGC GGTGTTCCGT
GACATCGAGG AAAAGCGCGC CACCGTGTTC CCCGGCGTGC CGACGATGTG GATCGCGCTC
GCCAACGATC CGTCACTGGA GAAGCGCGAT CTGTCGTCGC TGACGATGGC CGGCTCCGGC
GGCGCGCCGC TGCCGGTCGA GGTTGCGCGG CTGTTCGAGC GCAAAACCAA TCTGAAGCTG
AAGAGCGGTT GGGGCATGAC CGAGACCTGC TCGCCCGGCA CCGGCCATCC GCCGGAAGGG
CCGGACAAGC CGGGCTCGAT CGGCCTGATG CTGCCGGGCA TCGAACTGGA CGTCGTCGCG
CTCGATGATC CGAAGCGCGT GCTGCCGCCG GGGGAAGTCG GCGAACTCCG CGTTCGCGGT
CCCAATGTCA CCAAGGGCTA CTGGAATCGG CCGGAGGAGT CCGCTCACAG TTTTGTCGGC
GATCGTTTTC TGACCGGCGA CATCGGCTAT ATGGACCAGG ATGGCTACTT CTTCCTGGTC
GACCGCAAGA AGGACATGAT CATCTCCGGC GGCTTCAACG TCTATCCGCA GATGATCGAA
CAGGCGATCT ATGAGCACCC GGCGGTGCAA GAAGTGATCG TGATCGGCGT GCCGGACGAT
TACCGCGGCG AGGCGGCGAA GGCGTTCGTC AAGCTGCGCG ATGGCGCCAA GCCGTTCAGC
ATCGACGAGC TGCGCGCCTT CCTCACCGGC AAGCTCGGCA AGCACGAACT GCCGACCGCG
GTGGAGTTTC TCGACGAACT GCCGCGCACC ACGGTGGGCA AACTGTCCCG CCACGAACTG
CGCAGCCAGC AGACCACCAC CAAGACACAG ACCAAGTAA
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| Protein sequence | MSHPGEQYYP PGVRWDAVIA RGTLPELLAQ AAKEYSSRPA LEFRDRQITY TKLEAMAETA
AAALLAAGYG RDSSVALYLG NTPDHPINFF GALKAGARVV HLSPLDGERA LSHKLSDSGA
RVLITTDSAA LLPMAERFLA KGLLDRLIVC SDASWGESAT PLAPLPSDPR VITYADFIKD
ASKPAAWPAI SPDDIALLQY TGGTTGLPKG AMLTHSNLTS AVSIYDVWGL VRANSGGIHR
VICVLPLFHI YALTVILLRC LKQGDLISLH QRFDVAAVFR DIEEKRATVF PGVPTMWIAL
ANDPSLEKRD LSSLTMAGSG GAPLPVEVAR LFERKTNLKL KSGWGMTETC SPGTGHPPEG
PDKPGSIGLM LPGIELDVVA LDDPKRVLPP GEVGELRVRG PNVTKGYWNR PEESAHSFVG
DRFLTGDIGY MDQDGYFFLV DRKKDMIISG GFNVYPQMIE QAIYEHPAVQ EVIVIGVPDD
YRGEAAKAFV KLRDGAKPFS IDELRAFLTG KLGKHELPTA VEFLDELPRT TVGKLSRHEL
RSQQTTTKTQ TK
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