Gene Rpal_4209 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_4209 
Symbol 
ID6411893 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand- 
Start bp4512543 
End bp4513181 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content67% 
IMG OID642714091 
ProductNUDIX hydrolase 
Protein accessionYP_001993180 
Protein GI192292575 
COG category 
COG ID 
TIGRFAM ID[TIGR00052] nudix-type nucleoside diphosphatase, YffH/AdpP family 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.146155 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGAGA GTGACCAAAC TGATCAGCTC GCGGACCGCG CGGCGAACGT CACCGTGTCG 
GCCCCTGAAC TGATCGGGCA GGGGTTCATG GCGTACGAGC GCTTCGAGGT GTCGCTCCGG 
CGCGACGGCG AGCCGCCGCT GTTGCAGCGC CGCGATGTGC TGCGTGCCAG CCGCGTCGCT 
GCCGTGGTCC CGATTGATCT GGCGCGGGAT TCGATCGTCC TGATCCGGCA GTTTCGTCTT 
CCGGCGCATC TCGCCACCGG GCTTGGCGAT ATGGTCGAGA TCGTTGCCGG CCGGGTCGAT 
CCGCACGAGA GCGATGCGGA CGCGGCGCGG CGCGAATGTA TCGAGGAGAT CGGCGTGGCG 
CCGACGCAGC TCGCCGAACT CTATCGTGTC CTGCCGACGC CCGGCCTCAC CGATGAGCAA 
GTCATTTTCT TCGTCGGCCA CGTCGATTCC AGCGCGGTGC TGCAACGCGC CGGATTGGCG 
GAAGAAGACG AGGACACCGA GCCTTTCGTC GTCGCGATCG ACGAGGCCCT GGCGGCGCTC 
AGCCGCGGCG CATTCACCAA CGCGTTGCTG GTGACTGCCT TGCAGTGGCT GGCGCTCAAC 
CGCGCACGGC TGCGCGAGTG TTTCAGCCGA GCCGCTTGA
 
Protein sequence
MSESDQTDQL ADRAANVTVS APELIGQGFM AYERFEVSLR RDGEPPLLQR RDVLRASRVA 
AVVPIDLARD SIVLIRQFRL PAHLATGLGD MVEIVAGRVD PHESDADAAR RECIEEIGVA 
PTQLAELYRV LPTPGLTDEQ VIFFVGHVDS SAVLQRAGLA EEDEDTEPFV VAIDEALAAL 
SRGAFTNALL VTALQWLALN RARLRECFSR AA