| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4171 |
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| Symbol | ligD |
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| ID | 6411855 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 4474379 |
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| End bp | 4477123 |
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| Gene Length | 2745 bp |
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| Protein Length | 914 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642714053 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_001993142 |
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| Protein GI | 192292537 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.497319 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCCAGCA ACAAGCTCAG CATCTACCGC AAGAAACGCG ATTTCGAGCA GACCGCGGAG
CCGCGTGGCG ATGCCAAGGT GGCGCCGTCG AAGCAGCGGC GGTTCGTGAT TCAGAAGCAC
GACGCCACCC GGCTGCACTA CGACCTGCGC CTGGAATATG GCGGTGTCTT TAAGTCCTGG
GCGGTGACCA AAGGACCGTC GCTCGATCCC AACGACAAGC GCCTTGCTGT CGAGGTCGAG
GATCATCCGC TCGACTACGG TGACTTCGAA GGCACGATTC CCAAGGGTCA GTACGGCGGC
GGCACGGTGC AGCTCTGGGA CCGCGGCTAT TGGGAGTGCG ACGATCCCGA GCGCGGCTTC
AAGACCGGCG ACCTGAAGTT CACCCTGCAT GGCGAGAAGC TGCATGGCAG TTGGGTGCTG
GTGCGGATGC GGCACGACCG CAGCGGCGGC AAGCGCACCA ATTGGCTGCT GATCAAGCAC
CGCGACGACG ACGCCCGCGA GGGCGGCGCC AACACCGTGC TCGACGACGA CCGCTCGGTC
GCCTCGGGGC GCGCCATGGA AACGATCGCG GAAGGCAAGG GCAAGGCACC GAAGCCATTC
ATGCTGCGCA AGGCGGCCGC GAAGGTCACG GCGGACGCGG TGTGGGATTC CAACACCGGG
CTTGCGGCCG ATAAGCGGGC GGAGACTGGC GCTGCGAAGA AAGTCGCCAA GTCCAAGCCG
AAGACCTCCG CGAAAGCGAA AGCTGCCAAG TCCGCGAAGC CAGCGTCGCG GAGTAAGCTA
GCCGCGCAAG GCCAGCGCGC AGCCATGCCG GACTTCGTGC CGCCGCAGCT CTGCACCTCG
GTGGAGCGGC CGCCCGGCGG CGAGGGCTGG GGTCACGAAA TCAAGTTCGA TGGCTACCGG
ATGCAACTCC GCGTCGAGCA TGGCGAAGCC AGGCTGCTGA CACGCAAGGG TCTGGACTGG
ACCGCCAAGT TTAGTGCGAT CGCCGACGAA GCGGCATCGC TGCCGGACTC GATTATCGAC
ACCGAGGTGG TGGCGCTGGA TTCGCACGGG CAGCCGGATT TCGCGGCATT GCAGGCGGCG
CTGTCCGATG GTCACACCGA GAACTTGATC TGCTTCGCGT TCGATCTGCT CTACGTCGAT
GGTGAGGATC TGCGCGGCCT GCCGTTGGCG GAGCGCAAGG CGCGGCTTGC GGCCCTGCTG
AAAGCAGCGC GCGGCCGGCG CAAGGAGGGG CTGATCCGTT ACGTCGAGCA TTTCGACACG
GGCGGAGACG CGATCCTGCA ATCGGCCTGC AAGCTGTCGC TTGAGGGGAT CGTATCGAAA
AAGCTCGACG CCGCGTATCG CTCCGGTCGC AGCGATGGCT GGACCAAGGC GAAGTGCCGC
GCCGGCCATG AGGTGGTGAT CGGTGGCTGG AAGACCACGA ACGGCAAATT CCGCTCATTG
CTTGTCGGCG TCCATCGCGG CGATGTCCTT GCCTATGTGG GCATCGTCGG CACCGGCTTT
GGCCAGGACG TCGTCAAACG CATCCTGCCC GAGCTGAAAG CGCACAAAGC GGATACCAGT
CCGTTCAGCG GCGCCAATGC GCCGAAGAAG ACCCGTGAGT TGCATTGGGC TACGCCCGAT
CTCGTCGCTG AGATCGAATT TGCCGGCTTC ACCGGCGCCG GCATGGTGCG GCAGGCGTCG
TTCAAGGGCC TACGTGCCGA CAAGCCGGCG GAGGAGGTGG AGGCCGAGGA GCCGCAGCGG
GTCGAGGTTG CCGAGCCGGC ACTGAAGCGT CGCACTGCCA AGGCTTCGAA GTCGGGCAAG
CCGGCCGCAA AGCGCGCGGC GCCGCGCCGG GCCGATGCCG CCCGCTCCGA GGTGATGGGC
GTGGCGATCT CCAAACCCGA CAAGGAGCTG TGGCCGGCGA GCGAGATCGG CGCCGCGATC
ACCAAACGCG ATCTTGCCGA TTACTTCGCC GAGGTCGGCG ACTGGCTGAT CCCGCACATC
AAGGGACGGC CGTGTTCGAT CGTGCGGGCA CCGGACGGAA TCGACGGCGA GCACTTCTTC
CAGCGGCACG CGATGCCGGG AATGTCGAAC CTGATCGGGC TGGCAAAGGT CTCAGGCGAT
CGTAAGCCGT ATGTGCAGAT CGATCGTGTG GAAGGACTGA TCGCGGCGGC GCAGATCGGC
GGGGTTGAGC TGCATCCGTG GAACTGTGCG CCGAACCGCT ACGACGTGCC GGGACGTCTG
GTGTTCGATC TCGATCCGGC GCCTGAGGTC GGGTTCGACG AGGTGATCAC GGCCGCCAAG
GAGATGAAGC TGCGGCTGGA AACGCTCGGG CTTGCCACCT TCTGCAAGAC CACTGGCGGC
AAGGGGCTGC ACGTCGTGGT GCCGCTCAAA CCCGACGACG GCATCGACTG GAAGGCGGCG
AAGACCTTCG CCCAGACGGT GTGTGCGCAG ATGGCCGAGG ATAGCCCCGA GCAATATCTG
CTCAACATGT CGAAGCAGAA GAGGATCGGA AAGATCTTCC TCGATTACTT GCGCAACGAC
CGGATGTCGA CCGCGGTCGC CGTGCTGTCG CCACGGGCGC GCACCGGTGC CACGGTGTCG
ATGCCGCTGA CGTGGTCGCA GGTGAAGGCC GGGCTCGATC CCAAGCGCTA CACGATCAAG
TCGGTGCCCG CGCTGATGAA GCGCTCGAAG GCGTGGGCGG ATTACGACGA CGCCGCAGCT
CCGCTGAAGG CCGCGATCAA GACGCTGACC TCGGGCAAGA CATAG
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| Protein sequence | MASNKLSIYR KKRDFEQTAE PRGDAKVAPS KQRRFVIQKH DATRLHYDLR LEYGGVFKSW
AVTKGPSLDP NDKRLAVEVE DHPLDYGDFE GTIPKGQYGG GTVQLWDRGY WECDDPERGF
KTGDLKFTLH GEKLHGSWVL VRMRHDRSGG KRTNWLLIKH RDDDAREGGA NTVLDDDRSV
ASGRAMETIA EGKGKAPKPF MLRKAAAKVT ADAVWDSNTG LAADKRAETG AAKKVAKSKP
KTSAKAKAAK SAKPASRSKL AAQGQRAAMP DFVPPQLCTS VERPPGGEGW GHEIKFDGYR
MQLRVEHGEA RLLTRKGLDW TAKFSAIADE AASLPDSIID TEVVALDSHG QPDFAALQAA
LSDGHTENLI CFAFDLLYVD GEDLRGLPLA ERKARLAALL KAARGRRKEG LIRYVEHFDT
GGDAILQSAC KLSLEGIVSK KLDAAYRSGR SDGWTKAKCR AGHEVVIGGW KTTNGKFRSL
LVGVHRGDVL AYVGIVGTGF GQDVVKRILP ELKAHKADTS PFSGANAPKK TRELHWATPD
LVAEIEFAGF TGAGMVRQAS FKGLRADKPA EEVEAEEPQR VEVAEPALKR RTAKASKSGK
PAAKRAAPRR ADAARSEVMG VAISKPDKEL WPASEIGAAI TKRDLADYFA EVGDWLIPHI
KGRPCSIVRA PDGIDGEHFF QRHAMPGMSN LIGLAKVSGD RKPYVQIDRV EGLIAAAQIG
GVELHPWNCA PNRYDVPGRL VFDLDPAPEV GFDEVITAAK EMKLRLETLG LATFCKTTGG
KGLHVVVPLK PDDGIDWKAA KTFAQTVCAQ MAEDSPEQYL LNMSKQKRIG KIFLDYLRND
RMSTAVAVLS PRARTGATVS MPLTWSQVKA GLDPKRYTIK SVPALMKRSK AWADYDDAAA
PLKAAIKTLT SGKT
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