Gene Rpal_4136 details

Gene Information

• Locus tag: Rpal_4136
• ID: 6411820
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: +
• Start bp: 4430534
• End bp: 4432426
• Gene Length: 1893 bp
• Protein Length: 630 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 642714018
• Product: diguanylate cyclase with PAS/PAC sensor
• Protein accession: YP_001993107
• Protein GI: 192292502
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain
• TIGRFAM ID: [TIGR00229] PAS domain S-box; [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.138733
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGTCCACCG CGACCCTGGT CGTCGCCATG TTCGTGGTGG CGCTCGGCGC GTGCGTGCTC 
GGGCTGGTGG TGTGGAAGGG CTACGACTCG CACAAGATCG CCCTGGCGCA GAGTGAAACC 
GAGATGCGGA ATTTATCGCA CTCGCTCGCC GAGCACGCGA CGCACACATT CCAGGGCGCC 
GACGTGGTGC TCGATGACAT CGTGTCGTTC ATGAAGTGGC GCCCACATCC GAGCCCGGTC 
TTCAATGAGC GGCTGCGCGC GCTCGCCGAC AACCTGCCGC AGCTGTCCGA CGTCGCGATC 
CTGGACGCCG ACGGTCAGCT GACCTACGCT TCGGTGAAGC CGGTACCGGT CCTCGACAAC 
TCCGACCGGA GCTACTTCCG CTATCACCGC GCCAATGACG ACCACACATT ACTGATCACC 
GGGCCGATCC AGTCGCGAAC CTCCGGCGTG TGGGTGTTCG TCGTCAGCCG CCGCCTCGAA 
ACCGCCGACG GGAAGTTCTT CGGCGTCGTC GTCGCGACCA TCGAGAGCGA CTACTTCAGT 
ACATTCTACA AGACCTTCGA TCTCGGCCCC GGCGGCAGCA TCAGCCTGTT GCACAGCGAT 
GGCCGCCTGC TGATTCAGTG GCCGTCGCTG CAAACCGGGC GCGACTTGGC AAATATGGCG 
CTGTTCCAGA AGGCGCTGCC CAGGAGCCCG GACGGTTACT ACCTGACGGT GTCGCCGTTC 
GACGGCCTGA CCAAGTATTT GGCGTACCGG CGCGTCAGCC GCTATCCGCT GGTGGTGACG 
GTGGCGCGGA CCGAGGATTC GGTACTCTCC GGCTGGCGCG AGGCAGTGCG TTCCGACGCT 
GTCGTGGCGA CCGCGATGCT GGCCTGCGTC GTGCTGCTCG CCGCAGGCCT TGCAGCACAA 
CTGCGGACCC GCCAGGAAGT ACAAAACCTG CTGCGCGAGC GCGACGCCCA CTATCGGCTG 
ATCGACACCA ACATGGGCGA CGTGATCGTG CTGACCGACG AGGTCGGCAT CCTGCGGTTC 
GTCTCGATGT CGGTCGAGAG TGTACTCGGC CTGAAGGCCG ATCGACTGGT CGGTCGGTTG 
TGGACCGTGC TGGTGCACCC TGATGACGTG CCGTTCGTCG AGGCGGTCGG CGCGGGGCTG 
CCGGATTCGC CGGCTGGATT GTGCGTGGAG TTCCGGATGC GCTGTCCCGA GGGCAGGCTG 
GTCTGGCTCG AAGCCAATTT CGCCTACACC CGGAACGAGG ACGGCCCCAC CGATTGCGTC 
GTCAGTACCT TGCGGGACAT CACGCGGCGC AAGGCGATGG AGAAAGAGGT CGAAGCCCTC 
AATGCCCGCC TGGCGGAATT GGCGCGGACC GACGGCCTCA CCGGCCTGCC CAACCGCCGA 
TCGCTCGACG GCTTCGTCGC CCGCGTGATC ACTTCGTCAC CGACGCTCTC GGTGCTGATG 
ATCGACGTCG ATGATTTCAA AGGCTTCAAC GACCATTTCG GCCATCAAGG CGGCGACGAC 
GCGCTGCGGC AGCTCGGTCA TCTGTTCGGC GGGTTGGTCG CCAACGTTCA TGGCTTCGCG 
GCGCGCTACG GCGGCGAGGA ATTCACGATC GTGCTACCGA GTGCGGATGC GGTAGCGGCA 
GTGGATTTCG CCGAAAGCCT GCAGGCTGCG GTGCGCACGC TCGCGATCCG CAACCCGGCG 
TCGGCTCGCG GCTACCTGAC CGTCAGTATC GGCATCGCCT GCGGCACCGC ACCGTGCGAT 
TCCACCGTGC TGCTGCGCGA CGCCGACATC GCGCTGTATG AAGCCAAGCG GCGCGGCCGC 
GACTGTTGCG TCACCGCGGC CACCGCGTTT GTCGATGACG CCGCGCCGTT GCAACCGGAG 
CAGCCTTCGG CCTCAGCCGA CGCCACCTCG TAG 

 

Protein sequence

MSTATLVVAM FVVALGACVL GLVVWKGYDS HKIALAQSET EMRNLSHSLA EHATHTFQGA 
DVVLDDIVSF MKWRPHPSPV FNERLRALAD NLPQLSDVAI LDADGQLTYA SVKPVPVLDN 
SDRSYFRYHR ANDDHTLLIT GPIQSRTSGV WVFVVSRRLE TADGKFFGVV VATIESDYFS 
TFYKTFDLGP GGSISLLHSD GRLLIQWPSL QTGRDLANMA LFQKALPRSP DGYYLTVSPF 
DGLTKYLAYR RVSRYPLVVT VARTEDSVLS GWREAVRSDA VVATAMLACV VLLAAGLAAQ 
LRTRQEVQNL LRERDAHYRL IDTNMGDVIV LTDEVGILRF VSMSVESVLG LKADRLVGRL 
WTVLVHPDDV PFVEAVGAGL PDSPAGLCVE FRMRCPEGRL VWLEANFAYT RNEDGPTDCV 
VSTLRDITRR KAMEKEVEAL NARLAELART DGLTGLPNRR SLDGFVARVI TSSPTLSVLM 
IDVDDFKGFN DHFGHQGGDD ALRQLGHLFG GLVANVHGFA ARYGGEEFTI VLPSADAVAA 
VDFAESLQAA VRTLAIRNPA SARGYLTVSI GIACGTAPCD STVLLRDADI ALYEAKRRGR 
DCCVTAATAF VDDAAPLQPE QPSASADATS