| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4102 |
|---|
| Symbol | |
|---|
| ID | 6411786 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 4400475 |
|---|
| End bp | 4400813 |
|---|
| Gene Length | 339 bp |
|---|
| Protein Length | 112 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642713984 |
|---|
| Product | Protein of unknown function DUF1778 |
|---|
| Protein accession | YP_001993073 |
|---|
| Protein GI | 192292468 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4453] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.00360106 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAAG CGCGTGGAGC ACCTGCAAAA TCTGCTCGTC GTTCCTCTGC GGCCGCAGCG
CGCGGCGCGA CGTCCGACGC CAAGGGCAGC ATCAATCTGC GGATCGAGAC GGGCACCCGT
CAGCTGATCG ACGATGCGGC GGCGGTGCTG GGGAAGACGC GCACGGAATT CATGGTGGAG
AGCGCCCGGC GGCAGGCCGT CGATGTGCTG CTTGATCAGC GCTTATTCAC GCTCGATCCC
GAACGCTATG ATGCCTTCAT GCAGGCGCTC GACAATCCAC CTGCGCCGGG ACCGAAGCTC
AAGGCGTTGC TGCGTCGGGT CCCGGCATGG CGGACATAG
|
|---|
| Protein sequence | MAKARGAPAK SARRSSAAAA RGATSDAKGS INLRIETGTR QLIDDAAAVL GKTRTEFMVE
SARRQAVDVL LDQRLFTLDP ERYDAFMQAL DNPPAPGPKL KALLRRVPAW RT
|
|---|
| |