| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4061 |
|---|
| Symbol | |
|---|
| ID | 6411745 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 4359551 |
|---|
| End bp | 4360819 |
|---|
| Gene Length | 1269 bp |
|---|
| Protein Length | 422 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 642713943 |
|---|
| Product | secretion protein HlyD family protein |
|---|
| Protein accession | YP_001993032 |
|---|
| Protein GI | 192292427 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGGAC GCGACCAAGC TGCCCGCGTG CTGCGCTCCG AGCCGGAGAA GGGGGAGGCT
GTAGCGGCCG CCGGCGCACC GTCGCATCCG GCTGCGCCGT CGCAGGCCGA GGCGCTGCGC
TCGCTGCTGG AAGATCCCTC GACGCTGAAG CTCGCCGATC CGCCCGAGCC CGACGCCGAG
TCCGAGCCGG TGGCGCCTGC CGCGCGTCCG GGCGCGGCCG CCAAGCCGCC GAGCAAGAAG
AAGTTCGTGC TGATCGGCGT CGGCATCGCG GCGCTGGCCG CGATCGGTTA CTTCGGCACG
CAGTACATGT TGGTCGGCCG TTTCATGGTC GGCACCGACG ACGCCTATGT CCGCGCCAAC
AACACCACGC TCGGCGCCCG CGTGTCCGGC CACATCGCCG CGATCCTGCC CCGCGACAAC
TCCGAGGTGA AGGCCGGCGA CGTCGTGTTC CGGATCGACG ACGGCGACTA CAAGATCGCG
GTCGACTCCG CCCGCGCCAA GATCGCCACC CAGGAAGCCA CCATCGCCCG GATCGGCCGG
CAGATCGTCG CACAGCAGAG CGCAGTGGAG CAGGCGCAGG CGCAGCTCGC CTCCGCTGAA
GCCGCCGCCA AGCGCGCCGA CCTCGATTTC GATCGCCAGC AGGCGCTCTC CACCAAGGGC
TTCGCCTCGC GCGCGGTGTT CGAAACCTCG CAGGCCAGCC GCGACCAGAC CGTCGCCTCG
GTGGCCGCCG CCAAAGCTGC CTACGATGCG GCGCGCGACA ATGTCGAAGT GACCAAGGCG
CAGCAGGCCG AAGCCCGCGC CCAGCTCATC GAGCTGCAGA GCGCGCTGGC GAAGGCCGAG
CGCGATCTCG CTTTCACCAA TGTGCGCGCG CCGGTGACCG GCGTGTTCTC CAACCGCCTG
GTCAATGTCG GCGACTACAT CAATGCCGGC CAGCGGCTCG CCAACATCGT GCCGCTCGAC
GGCGTCTATA TCGATGCCAA CTTCAAGGAA ACGCAGCTGC GCCGGCTGAA GCCCGGCCAG
AAGGTCGGCA TCTCGGTCGA CGCGTTCTCC AGCCGCAAGA TCGAAGGCAC GGTCGACAGC
CTGGCGCCGG CGGCCGGGCA GGTGTTCACC CTGCTGCCGC CCGACAACGC CACCGGCAAC
TTCACCAAGA TCGTGCAGCG CGTCCCGGTT CGGATTCGCG TGCCCGCCGA CGTGGCGCGC
GAAGGGCTGC TGCGCGCCGG CATGTCGGTC TATGTCGACG TCGACACCCG GACCGGCGAG
GCCAAGTAG
|
|---|
| Protein sequence | MSGRDQAARV LRSEPEKGEA VAAAGAPSHP AAPSQAEALR SLLEDPSTLK LADPPEPDAE
SEPVAPAARP GAAAKPPSKK KFVLIGVGIA ALAAIGYFGT QYMLVGRFMV GTDDAYVRAN
NTTLGARVSG HIAAILPRDN SEVKAGDVVF RIDDGDYKIA VDSARAKIAT QEATIARIGR
QIVAQQSAVE QAQAQLASAE AAAKRADLDF DRQQALSTKG FASRAVFETS QASRDQTVAS
VAAAKAAYDA ARDNVEVTKA QQAEARAQLI ELQSALAKAE RDLAFTNVRA PVTGVFSNRL
VNVGDYINAG QRLANIVPLD GVYIDANFKE TQLRRLKPGQ KVGISVDAFS SRKIEGTVDS
LAPAAGQVFT LLPPDNATGN FTKIVQRVPV RIRVPADVAR EGLLRAGMSV YVDVDTRTGE
AK
|
|---|
| |