| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4043 |
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| Symbol | |
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| ID | 6411726 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 4337739 |
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| End bp | 4338728 |
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| Gene Length | 990 bp |
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| Protein Length | 329 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 642713925 |
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| Product | D-alanine--D-alanine ligase |
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| Protein accession | YP_001993014 |
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| Protein GI | 192292409 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
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| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.860654 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGACATA CCATTCTGTT CGGCGGCACC AGCAAAGAGC GCCTGGTGTC GGTCGCCTCG
GCGCAGGCGC TGCACAGTGC GCTGCCGGAC GCCGATCTGT GGTTCTGGAA CGACGACGAC
TGCGTCCACG CCGTGTCGGC GCAAGCGTTG CTGGCGCACG CCCGGCCGTT CGAAGAGGCG
TTCGTGCCGG ACGGCGAGGA CATCGGCCCG CTCGAGACCG CGCTCGACCG TGCCGCGGCC
GAGCAGCGGC TGCTGGTGCT CGGCCTGCAC GGCGGCGTCG CCGAGAACGG CGAGTTGCAG
GCAATGTGCG AATTGCGCCG GGTGCCGTTC ACCGGCTCTG GCTCGGCGGC TTCGCATTTA
GCCTTCGACA AGGTCGCCGC CAAGCGCTTC GCCTCGATCG CCGGTGTCCG GACCGTGACC
GGGATCGCGC TGGCCGATGC TGAGGCGGCG CTCGAAGCTC ACGGCCGGCT GATCGCCAAG
CCGGCCTGCG ACGGCTCCAG CTATGGGCTG TTCTTCATCA ACGCCAAGCA GGACCTGGTG
GCGGTGCGCC ATGCCGCCAA GACCGAGGAC TATCTGATCG AGCCGTTCGT CGCCGGCGTC
GAGGCGACCT GCGGCGTGCT CGAAGCCGAG GACGGCTCGC TGCGCGCGCT GCCGCCGATC
GAGATCGTGC CGGCCGACGG CGGCTTCGAC TACACGGCGA AATATCTCGC CAAATCGACC
CAGGAGATCT GCCCCGGCCG GTTCGCCCCC GAGATCGCGT CGGCCATCAT GGACTACGCC
GTGCGGGCGC ACCGGGTGAT GTCGTGCCGG GGCTATTCGC GCTCCGACTT TATCGTCGGC
AAGGACGGTC CGATCTTCCT GGAGACCAAC ACGCTGCCCG GCCTGACCAA GGCCTCGCTC
TATCCCAAGG CGTTGAACGC GCTGGGAATC CCCTTCGTCG ACTTCCTCCG CGGCCAGATC
GCGCTGGCCG AGCGCGCCGT GCGGAGCTGA
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| Protein sequence | MRHTILFGGT SKERLVSVAS AQALHSALPD ADLWFWNDDD CVHAVSAQAL LAHARPFEEA
FVPDGEDIGP LETALDRAAA EQRLLVLGLH GGVAENGELQ AMCELRRVPF TGSGSAASHL
AFDKVAAKRF ASIAGVRTVT GIALADAEAA LEAHGRLIAK PACDGSSYGL FFINAKQDLV
AVRHAAKTED YLIEPFVAGV EATCGVLEAE DGSLRALPPI EIVPADGGFD YTAKYLAKST
QEICPGRFAP EIASAIMDYA VRAHRVMSCR GYSRSDFIVG KDGPIFLETN TLPGLTKASL
YPKALNALGI PFVDFLRGQI ALAERAVRS
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