| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3956 |
|---|
| Symbol | |
|---|
| ID | 6411637 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 4245178 |
|---|
| End bp | 4246347 |
|---|
| Gene Length | 1170 bp |
|---|
| Protein Length | 389 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642713837 |
|---|
| Product | acetyl-CoA acetyltransferase |
|---|
| Protein accession | YP_001992927 |
|---|
| Protein GI | 192292322 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0183] Acetyl-CoA acetyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.358639 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGCCA GCATCGTTGG ATGGGCCCAT ATGCCGTTCG GCAAGTTCGA CGCCGAAACC
GTGGAAAGCA TGATCGTCCG TGTCGCCACC GAGGCGATCG CCGACGCCGG GATCGCGGCC
TCGGATGTCG ACGAAATCGT GCTCGGGCAT TTCAATGCCG GATTCTCGCC GCAGGACTTC
ACAGCCGCGC TGGTGCTGCA GGCCGATCCG GCGCTCCGCT TCAAGCCGGC GACGCGCGTC
GAGAACGCCT GCGCGACCGG CTCGGCCGCC GTGCATCAGG GCATCCGCGC GATCGAAGCC
GGTGCCGCCA AGATCGTGCT GGTGGTCGGC GTCGAGCAGA TGACCCGCAC GCCCGGGCCG
GAGATCGGCA AGAACCTGCT GCGCGCCTCT TACTTGCCGG AGGACGGCGA CACGCCCGCC
GGGTTCGCTG GTGCGTTCGG CATCATCGCT CAGAAGTACT TCCAGAAATA TGGCGACCAG
TCCGATGCGC TGGCGATGAT CGCCGCCAAG AACCACCACA ACGGCGTTGC CAATCCCTAT
GCGCAGATGC GCAAGGATTT CGGCTTCGAG TTCTGCCGCG CCGAAGGCGA GAAGAATCCA
TTCGTCGCCG GGCCCTTGAA GCGCACCGAT TGCTCGCTGG TCTCGGACGG CGCCGCGGCG
CTGGTGCTGA CCTCGGCCGA GAACGCCAAG GCGATGGGCA AGGCGGTCAA CATCCGCGCC
CGCGCCCATG CGCAGGACTT TCTGCCGATG TCCAAGCGCG ACATCCTGCA GTTCGAAGGC
TGCACCGTCG CCTGGCAGCG CGCGCTGGAG CAGGCCGGCG TCACGCTGAA CGATCTGTCG
TTCGTCGAGA CCCACGATTG CTTCACCATC GCCGAGCTGA TCGAATACGA AGCGATGGGC
CTGACGCCGA AGGGGCAGGG CGCCCGCGCC ATCAAGGAGG GCTGGACCCA GAAGGACGGC
AAGCTGCCGA TCAATCCGTC CGGCGGTCTC AAGGCCAAGG GCCATCCGAT CGGCGCCACC
GGCGTGTCGA TGCACGTGCT GAGCGCGATG CAGCTGCTTG GCCAGGCGCC GGAAGGCATG
CAGATCAAGG ACGCCAAGCT CGCCGGCATC TTCAACATGG GCGGCGCCGC GGTCGCCAAC
TACGTGTCGG TGCTCGAACC GGCCAAGTAA
|
|---|
| Protein sequence | MTASIVGWAH MPFGKFDAET VESMIVRVAT EAIADAGIAA SDVDEIVLGH FNAGFSPQDF
TAALVLQADP ALRFKPATRV ENACATGSAA VHQGIRAIEA GAAKIVLVVG VEQMTRTPGP
EIGKNLLRAS YLPEDGDTPA GFAGAFGIIA QKYFQKYGDQ SDALAMIAAK NHHNGVANPY
AQMRKDFGFE FCRAEGEKNP FVAGPLKRTD CSLVSDGAAA LVLTSAENAK AMGKAVNIRA
RAHAQDFLPM SKRDILQFEG CTVAWQRALE QAGVTLNDLS FVETHDCFTI AELIEYEAMG
LTPKGQGARA IKEGWTQKDG KLPINPSGGL KAKGHPIGAT GVSMHVLSAM QLLGQAPEGM
QIKDAKLAGI FNMGGAAVAN YVSVLEPAK
|
|---|
| |