| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3955 |
|---|
| Symbol | |
|---|
| ID | 6411636 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 4243630 |
|---|
| End bp | 4245156 |
|---|
| Gene Length | 1527 bp |
|---|
| Protein Length | 508 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642713836 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_001992926 |
|---|
| Protein GI | 192292321 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.132635 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATCTGG CGGAATGGCT TGCTGCGAGT GCCCGGCTAC GGCCGGGCGC TCCGGCGCTG
CTGACGGGTA CCACGGTCGA TGCCGACTAC GCGACGTTCG CGTCGCGGGC GGCATCGTTC
GGCGCGGCGC TGGCGCGCGA TTACGGCATC GCGCCCGGCG ACCGGGTCGC GTTGTTCGCG
CATAATTGCA CGCGCTATCT CGAAGCGCTG TACGGCATCT GGTGGGCTGG CGCGGTCGCG
ATCCCGATCA ACGCCAAGCT GCACGGCAAG GAAGTCGCCT GGATCTGCAG CAATGCGGAG
GCCAGGCTCG CGCTGATCTG CGACGACACT GCCGACACTT TCAATGAGGC CTCATGCGAT
CTGCCGCCCG GCCTGGCGGT GCTGGCGATC GACAGCGACG GCTTCGATCG CGCGCGTAGT
GGCGCGGGTA GCAAGGCGCC GGTCGCACGC GACGATGACG ATCTCGCCTG GCTGTTCTAC
ACCTCCGGTA CCACCGGCCG GCCCAAGGGG GTGATGCTCA GCCACGGCAA TCTCGTGGCG
ATGTCGCTGA GCTATCTGGC CGATGTCGAC GCGGTGACGC CCGAGGACGC GGCGCTGTAC
GCCGCGCCGA TCTCGCACGG CGCCGGGCTC TACAACATGA TCCACGTCCG GTTCGGTGCG
CGGCATGTCG TACCGGAGTC CGGCGGGTTC GATCCGGACG AGGTGCTCGG CCTCGGCAAG
CAGCTCGGCA ACGTCGCGAT GTTTGCGGCG CCGACCATGA TCAAGCGGCT GGTCGAGGCC
GCCAAGCGTC GCGGCGAAGC CGGCGAGGGG CTGCGCACCA TCGTCTATGG CGGCGGCCCG
ATGTATCTCG CCGACATCCG CGAGGCGCTG AGCGTGATGG GCCAGCGTTT CGTGCAGATC
TACGGCCAGG GTGAATCGCC GATGACGATC ACCTCGCTGA AGCGCGCGCT GCACGCCGAC
GTCGATCATC CACGCTATCT GCAGCGGCTC GCCTCGGTCG GCACCGCGCA GAGCGTGGTG
TCGGTGCGGA TCACCGGTGC GAACGGAGAA GTGCTGCCGG CGGGCGAGAC CGGCGAGATC
GAGGTCAAGG GCTCAACCGT GATGCTCGGC TATTGGAACA ATCCGCAGGC CAATGCCGAG
ACGCTGAAGG ACGGCTGGCT GCGCACCGGC GATGTCGGGC GCCTGGATGA GGACGGCTTC
CTGACGCTGT CGGACCGCTC CAAGGACGTC ATCATCTCCG GCGGCACCAA TATCTATCCG
CGCGAGGTCG AGGAGGCGCT GCTGACGCAT CCGGCTGTGC GCGAGGTCTC TGCGATCGGC
GTCGCAGATC CGGAATGGGG CGAGAACGTC GTCGCCTGCG TTGTGCTCGC CGACGGCGCC
GCGGCCGACG ATGCCACGCT CGACGCCCAC TGCCTCGCTA CGATCGCCCG CTTCAAGCGC
CCCAAGCGTT ACGTCTATCT CGACGCGCTG CCGAAGAATA ATTACGGCAA GGTGCTGAAG
ACGGAACTGC GGAAGATTGT GAAGTAA
|
|---|
| Protein sequence | MNLAEWLAAS ARLRPGAPAL LTGTTVDADY ATFASRAASF GAALARDYGI APGDRVALFA
HNCTRYLEAL YGIWWAGAVA IPINAKLHGK EVAWICSNAE ARLALICDDT ADTFNEASCD
LPPGLAVLAI DSDGFDRARS GAGSKAPVAR DDDDLAWLFY TSGTTGRPKG VMLSHGNLVA
MSLSYLADVD AVTPEDAALY AAPISHGAGL YNMIHVRFGA RHVVPESGGF DPDEVLGLGK
QLGNVAMFAA PTMIKRLVEA AKRRGEAGEG LRTIVYGGGP MYLADIREAL SVMGQRFVQI
YGQGESPMTI TSLKRALHAD VDHPRYLQRL ASVGTAQSVV SVRITGANGE VLPAGETGEI
EVKGSTVMLG YWNNPQANAE TLKDGWLRTG DVGRLDEDGF LTLSDRSKDV IISGGTNIYP
REVEEALLTH PAVREVSAIG VADPEWGENV VACVVLADGA AADDATLDAH CLATIARFKR
PKRYVYLDAL PKNNYGKVLK TELRKIVK
|
|---|
| |