| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3898 |
|---|
| Symbol | |
|---|
| ID | 6411578 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 4185316 |
|---|
| End bp | 4186086 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642713780 |
|---|
| Product | Rhomboid family protein |
|---|
| Protein accession | YP_001992871 |
|---|
| Protein GI | 192292266 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGATTCTC CGCTCGTATC GTCGTCGTTG CCGCCGGAGC CGCCGCAGCC GCAGCGCGAG
CCGATTCTAA CGCTGCCCGG GGCGGTGACG GCCTACGTTG CGCTGCTGTC GGTGATCCAT
CTGCGCACGC TGCTCTCGCC GGAGTTCGAG TACTGGACCA TCGAGATGTT CGGCTTCATC
CCGATGCGTT ACGAGCAGAC GCTGCTCGAC TCGCCGTTCC CCGGCGGCAC CGGGGCGAAG
ATCTGGACCT TCGTCACCTA TTCGCTGCTC CACGCCAATC TCAGCCACAT CGTGTTCAAC
GTGCTGTGGC TGCTACCGTT CGGCAGCGCG CTGGCGCGGC GGTTCGGCAG CCTGCGGTTC
TTCGTGTTCA TGGCGGTGAC GGCGGCGGCC GGCGCGTTCG CGCATCTGCT CACCCATTCC
AACGACGTTG CTCCGATGAT CGGCGCGTCG GCCTCGGTGT CTGGTGCGAT GGCGGCGGCG
ATCCGCTTCG CCTTCGTCCG CGGCAGTTTC CTGTCGCTGC GCCGCGGAGA CGCGGATGCG
GCCGCGAAGG TGCCTGCGCA GCCGCTGCTG AGGGCGCTGC GCGATCCGCG GGTGCTGGCG
TTCCTTGGTA TTTGGTTCGG CATCAACATC ATCTTCGGGA TCGGCTCGAT TGCGATCGGC
AACGAGGGCG CCAGTGTCGC CTGGCAGGCG CATATCGGCG GCTTCTTTGC AGGGCTGCTG
CTGTTCTCGT TGTTCGATCC GGTGCCGCGG GTCCCTGACG CGCGCGCCTG A
|
|---|
| Protein sequence | MDSPLVSSSL PPEPPQPQRE PILTLPGAVT AYVALLSVIH LRTLLSPEFE YWTIEMFGFI
PMRYEQTLLD SPFPGGTGAK IWTFVTYSLL HANLSHIVFN VLWLLPFGSA LARRFGSLRF
FVFMAVTAAA GAFAHLLTHS NDVAPMIGAS ASVSGAMAAA IRFAFVRGSF LSLRRGDADA
AAKVPAQPLL RALRDPRVLA FLGIWFGINI IFGIGSIAIG NEGASVAWQA HIGGFFAGLL
LFSLFDPVPR VPDARA
|
|---|
| |