Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_3896 |
Symbol | |
ID | 6411576 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 4183993 |
End bp | 4184628 |
Gene Length | 636 bp |
Protein Length | 211 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642713778 |
Product | transcriptional regulator, TetR family |
Protein accession | YP_001992869 |
Protein GI | 192292264 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCGACTC TGACCACCGC TTCCAAAGGC GGACGTCCGC GCAAAAGCGA TGTCGAGGCG AAGTCGCTTC ACATCATCGA GACGGCGTCG CGACTGTTCG CGCAGCAGGG CTTCGCTGCG ACCTCGGTCG AGCAGGTCGT GGCCGCATGC GGCGTCGGCA AGGACACCGT GTATCGACGC TTCCCATCGA AGCTGGCGTT GTTCGAAGGG GTGGTCGAGC ATGCGCGGGT GCAGACGCTG GCGCACTTCC AGACCACGAT GGCGAGCCAG ACGGGGGATG CGCTGACGCA ACTTCGCGCG GCGGCACGCT GGCTCCTTGC CGTCAACGTC GATCCCACGC TGATCGCTTT CAAGCGCATC GCTTTCAGCG AGGCGATCGT GGTCGGTCAG GCCGTTGCCA GCCGGACCGA CGATCCGATC ATGGACCGGT TGCTGTCGCT GATCAGCGAG GCGCAGAAGG CCGGCGCCCT CGCCCGCGGC GACGTGCGCT TTCTCGCGAG CCAGCTTCTC AACAGCATCG CGATGGGGCC GATGATCGAG GCGATGCTGG GCGGGACGAC CTATGCGTCG ACCCGCGCCC AGAACGCTTA TTTCGACAAG GCCTGGGCGC TGTTTCTCGA CGGCGCCGGC GCCTGA
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Protein sequence | MPTLTTASKG GRPRKSDVEA KSLHIIETAS RLFAQQGFAA TSVEQVVAAC GVGKDTVYRR FPSKLALFEG VVEHARVQTL AHFQTTMASQ TGDALTQLRA AARWLLAVNV DPTLIAFKRI AFSEAIVVGQ AVASRTDDPI MDRLLSLISE AQKAGALARG DVRFLASQLL NSIAMGPMIE AMLGGTTYAS TRAQNAYFDK AWALFLDGAG A
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