Gene Rpal_3817 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_3817 
Symbol 
ID6411495 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand- 
Start bp4100163 
End bp4100795 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content58% 
IMG OID642713698 
Productintegrase family protein 
Protein accessionYP_001992791 
Protein GI192292186 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.736864 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGAGCA CCGAAGAAAT TGCACGGTCC GGCCATGTAA TCCCGTGGAA TAAGGGAAAA 
CTGATTAGGC CGAAACCACC GCTGCAGACG AAACATGTTT GGGCAATCCG GAGCAAGCTG 
CTGATGGAAG GGCGGACGCG CGAACTCGCG ATGTTCAATC TTGCTATCGA CAGCAAGCTC 
CGCGGGTGCG ATCTGGTGAA GCTCAGGATC GAAGACGTCG CACCGCACGG CTTGGCAATT 
GACCGAGCTA TAGTCCGACA ACAGAAAACC GGACATCCCG TCAAGTTCGA GTTGACGGAG 
CAGACGCGCG ACGCTGTCGA CGCGTATTTG AAGTCAAGGC GGGCTGAGGC CAGGGGCTTT 
CTATTCCCGA GCCGGCGTCA TCCAGACGCG CCTATGACCA CTCGGCAGTA TGCTCGGCTG 
ACCAAGGAGT GGGTGTCAGG CATCGGATTA GACGCAGGTT TCTTCGGGAC GCACTCGCTG 
CGGCGGACGA AGGCCACGCT GATCTATCGG CGAACCGGAA ATCTTCGGGC GGTTCAACTG 
CTGCTCGGCC ACACGAAAAT TGAGAGCACC GTCAGGTATC TTGGGACCGA AGTCGACGAT 
GCGCTCGCCA TGGCCGAGCA GGTCGACGTC TGA
 
Protein sequence
MQSTEEIARS GHVIPWNKGK LIRPKPPLQT KHVWAIRSKL LMEGRTRELA MFNLAIDSKL 
RGCDLVKLRI EDVAPHGLAI DRAIVRQQKT GHPVKFELTE QTRDAVDAYL KSRRAEARGF 
LFPSRRHPDA PMTTRQYARL TKEWVSGIGL DAGFFGTHSL RRTKATLIYR RTGNLRAVQL 
LLGHTKIEST VRYLGTEVDD ALAMAEQVDV