Gene Rpal_3704 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_3704 
Symbol 
ID6411381 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp3963432 
End bp3964655 
Gene Length1224 bp 
Protein Length407 aa 
Translation table11 
GC content67% 
IMG OID642713585 
Productbeta-lactamase 
Protein accessionYP_001992679 
Protein GI192292074 
COG category[V] Defense mechanisms 
COG ID[COG1680] Beta-lactamase class C and other penicillin binding proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.136974 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAGCGA CCGCCGCCGC ACCCTCCGCC CTCGCCCCGC AGACCCCGGC TTTGCCGGAA 
GCCAAGCCCG AGACCCTGGG GCTGTCGCCG CGCCGGCTGC AGGTGATGTC GGACGCCTTC
AAGCGGGAGA TCGACAAGGG CACCATCCCC GGCGTCACTG TGCTGGTGTC GCGCAAGGGC
AAGATCGGCT GGTTCGAGGC GCTGGGGCGG CAGGCGCCCG GTTCAGACGC GCCGATGCGC
CGCGACAGCA TCTTCCGGAT CTTCTCGATG ACCAAGCCGA TCGTCTCGGT CGGCATCATG
CAGCTGGTCG AGGACGGCCA GATGCTGCTC GACGATCCGC TCTCGAAATA CATTCCCGAA
TTTGAGAATA CCAACGTCGG CATCGTCCGC GGCGGCGAAC TGGAGCTGGT GCCGCTGCAA
CGCCCGATCA CCATCCAGGA TCTGCTGCGC CACACCTCGG GTATCACCTA CGACCACACC
GGCGACGGTC CGATCCACAA GATGTACCGC GCCTCGCGAA TCCGCAGCCG CAAGATCACC
AACGAAGAGC ACGCCACTTT GGTCGCCTCG ATGCCGCTGG TGTGTCAGCC CGGCGCGGCG
TGGAATTACA GCCGCTCGAC CGACATTCTC GGCCGGGTGA TCGAAGTGGT CGCCGGCAAG
ACCCTCGGCA CGTTCCTGAC CGAACGCATC CTGGCGCCGC TGCAGATGAG CGAGACCGGC
TTCCACACCG CGGCCGACAA CAAGGGCCGG CTCGCCGAGG CGTTCCCGGC CGATCCGTGG
ACCGGCGATC CGGTGGCGCT GTTCAACATG CTGGAAAAGC CGGCGATGGA ATCCGGCGGC
GGCGGCCTGG TCTCGACCAC GATGGACTAT GCGCGTTTCT GCCAGATGCT GCTCGGCGGC
GGCACGCTGG ATGGGGCGCG CATCATCGGC CGCAAGACGC TGGAGCTGAT GGCGAGCAAT
CACCTTGAGC CGCACATCCC GCCGGACAAC TACATCCTGC CGCCGGGCAA CGGCTTCGGC
CTCGGTTTCG CGGTCCGCAC CCAGTCGGGA ATCTCGCCCT TCCCCGGCTC GGTCGGGCAG
TTCTACTGGA GCGGCATCGC CGGCACGTTC TTCTGGATCG ACCCGGCCGA GCAGCTATTC
GCGGTATTCA TGTCGCAGGG ACCGGGGCAG CGCGAATACT TCCGCACCCT GGTGCGCGAC
CTCGTGTACG CGGCGGTGGA GTAG
 
Protein sequence
MTATAAAPSA LAPQTPALPE AKPETLGLSP RRLQVMSDAF KREIDKGTIP GVTVLVSRKG 
KIGWFEALGR QAPGSDAPMR RDSIFRIFSM TKPIVSVGIM QLVEDGQMLL DDPLSKYIPE
FENTNVGIVR GGELELVPLQ RPITIQDLLR HTSGITYDHT GDGPIHKMYR ASRIRSRKIT
NEEHATLVAS MPLVCQPGAA WNYSRSTDIL GRVIEVVAGK TLGTFLTERI LAPLQMSETG
FHTAADNKGR LAEAFPADPW TGDPVALFNM LEKPAMESGG GGLVSTTMDY ARFCQMLLGG
GTLDGARIIG RKTLELMASN HLEPHIPPDN YILPPGNGFG LGFAVRTQSG ISPFPGSVGQ
FYWSGIAGTF FWIDPAEQLF AVFMSQGPGQ REYFRTLVRD LVYAAVE