Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_3704 |
Symbol | |
ID | 6411381 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 3963432 |
End bp | 3964655 |
Gene Length | 1224 bp |
Protein Length | 407 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 642713585 |
Product | beta-lactamase |
Protein accession | YP_001992679 |
Protein GI | 192292074 |
COG category | [V] Defense mechanisms |
COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.136974 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACAGCGA CCGCCGCCGC ACCCTCCGCC CTCGCCCCGC AGACCCCGGC TTTGCCGGAA GCCAAGCCCG AGACCCTGGG GCTGTCGCCG CGCCGGCTGC AGGTGATGTC GGACGCCTTC AAGCGGGAGA TCGACAAGGG CACCATCCCC GGCGTCACTG TGCTGGTGTC GCGCAAGGGC AAGATCGGCT GGTTCGAGGC GCTGGGGCGG CAGGCGCCCG GTTCAGACGC GCCGATGCGC CGCGACAGCA TCTTCCGGAT CTTCTCGATG ACCAAGCCGA TCGTCTCGGT CGGCATCATG CAGCTGGTCG AGGACGGCCA GATGCTGCTC GACGATCCGC TCTCGAAATA CATTCCCGAA TTTGAGAATA CCAACGTCGG CATCGTCCGC GGCGGCGAAC TGGAGCTGGT GCCGCTGCAA CGCCCGATCA CCATCCAGGA TCTGCTGCGC CACACCTCGG GTATCACCTA CGACCACACC GGCGACGGTC CGATCCACAA GATGTACCGC GCCTCGCGAA TCCGCAGCCG CAAGATCACC AACGAAGAGC ACGCCACTTT GGTCGCCTCG ATGCCGCTGG TGTGTCAGCC CGGCGCGGCG TGGAATTACA GCCGCTCGAC CGACATTCTC GGCCGGGTGA TCGAAGTGGT CGCCGGCAAG ACCCTCGGCA CGTTCCTGAC CGAACGCATC CTGGCGCCGC TGCAGATGAG CGAGACCGGC TTCCACACCG CGGCCGACAA CAAGGGCCGG CTCGCCGAGG CGTTCCCGGC CGATCCGTGG ACCGGCGATC CGGTGGCGCT GTTCAACATG CTGGAAAAGC CGGCGATGGA ATCCGGCGGC GGCGGCCTGG TCTCGACCAC GATGGACTAT GCGCGTTTCT GCCAGATGCT GCTCGGCGGC GGCACGCTGG ATGGGGCGCG CATCATCGGC CGCAAGACGC TGGAGCTGAT GGCGAGCAAT CACCTTGAGC CGCACATCCC GCCGGACAAC TACATCCTGC CGCCGGGCAA CGGCTTCGGC CTCGGTTTCG CGGTCCGCAC CCAGTCGGGA ATCTCGCCCT TCCCCGGCTC GGTCGGGCAG TTCTACTGGA GCGGCATCGC CGGCACGTTC TTCTGGATCG ACCCGGCCGA GCAGCTATTC GCGGTATTCA TGTCGCAGGG ACCGGGGCAG CGCGAATACT TCCGCACCCT GGTGCGCGAC CTCGTGTACG CGGCGGTGGA GTAG
|
Protein sequence | MTATAAAPSA LAPQTPALPE AKPETLGLSP RRLQVMSDAF KREIDKGTIP GVTVLVSRKG KIGWFEALGR QAPGSDAPMR RDSIFRIFSM TKPIVSVGIM QLVEDGQMLL DDPLSKYIPE FENTNVGIVR GGELELVPLQ RPITIQDLLR HTSGITYDHT GDGPIHKMYR ASRIRSRKIT NEEHATLVAS MPLVCQPGAA WNYSRSTDIL GRVIEVVAGK TLGTFLTERI LAPLQMSETG FHTAADNKGR LAEAFPADPW TGDPVALFNM LEKPAMESGG GGLVSTTMDY ARFCQMLLGG GTLDGARIIG RKTLELMASN HLEPHIPPDN YILPPGNGFG LGFAVRTQSG ISPFPGSVGQ FYWSGIAGTF FWIDPAEQLF AVFMSQGPGQ REYFRTLVRD LVYAAVE
|
| |