| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3604 |
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| Symbol | |
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| ID | 6411280 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 3859306 |
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| End bp | 3860184 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642713484 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001992579 |
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| Protein GI | 192291974 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.943405 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGATTGC TCGATGGCAA GGTGGCGTTG ATCACCGGGG CGGGCGGCGG GCTCGGTGAG
GCCTATGCCA AGCTGTTCGC GCGCGAAGGC GCAGCGGTGG TGGTCAACGA TCTCGGCGGA
CCGCGTGACG GTTCGGGCTC CGACGCCGGC ATGGCGCAGC AGGTGGTCGA CTCCATCAAG
GCCGCGGGCG GCCGCGCCGT CGCCAACACC GCCGACATCT CGACGATGGC GGGCGGGCAA
TCGGTGTTCG ACGATGCGAT CAAGCATTTC GGCCGCGCCG ACATCCTGGT CAACAACGCC
GGCATCCTGC TTGACCAGAC CTTCGCCAAG GCCTCGGAGG AGAGCTGGGA CAAGGTGATG
AAAGTGCACC TCAAGGGAAC GTTCTGCGTC ACCCAGCCGG TGTTCAAATG GATGAAGGAC
AATGGCGGCG GCGTCATCGT CAACACCTCG TCGACCTCCG GTCTGCTCGG CAATTTCGGC
CAAAGCAATT ACGGCGCGGC GAAGGGCGGC ATCTGGGGCC TGTCCAACGT GCTGGCGATC
GAGGGCCGCA AATACAACAT CCGGATCTGG ACGCTGGCGC CCGGTGCGCT GACCCGGATG
ACCGAAGACT TGCCGCGTTA TCGCGAAAAT CCCGGCGCGG CGCTGACGCC GGAGGGCATC
GCCCCGGCGG TGCTGTACAT GGTCTCCGGC CTGTCCGGCG ACCAGACCGG CAAGGTGCTC
GGCGTGTCCG GCCCGCGCGG GGTGCGCGAG ATGAAGCTGA TGGAAATGGA CGGCTGGAAG
CCGCCGCACA ACGGCTGGTC GGCGGAGGAC ATTGTGAGCC ACGCCGGCGA GATTTTCTTT
TCGGAAGAGG CTATCAAGGC GGCCGGGCGC CCGCGCTGA
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| Protein sequence | MGLLDGKVAL ITGAGGGLGE AYAKLFAREG AAVVVNDLGG PRDGSGSDAG MAQQVVDSIK
AAGGRAVANT ADISTMAGGQ SVFDDAIKHF GRADILVNNA GILLDQTFAK ASEESWDKVM
KVHLKGTFCV TQPVFKWMKD NGGGVIVNTS STSGLLGNFG QSNYGAAKGG IWGLSNVLAI
EGRKYNIRIW TLAPGALTRM TEDLPRYREN PGAALTPEGI APAVLYMVSG LSGDQTGKVL
GVSGPRGVRE MKLMEMDGWK PPHNGWSAED IVSHAGEIFF SEEAIKAAGR PR
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