| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3582 |
|---|
| Symbol | |
|---|
| ID | 6411257 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 3831488 |
|---|
| End bp | 3832336 |
|---|
| Gene Length | 849 bp |
|---|
| Protein Length | 282 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 642713461 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | YP_001992557 |
|---|
| Protein GI | 192291952 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACC TCGACATCGC CGCAGTGAGA GCCTTCGTTC GGGTCGCCGA ACTGCGCAGC
TTCACGCGAG CCGCGGAAGC GCTTGGCACC ACCCAGGCTG CGATCAGCAT GAGGCTGCAG
CGTCTCGAGG CGCTGCTCGA ACGCCGGCTG CTGGAGCGTT CGCCGCGATC GGTCGGACTG
ACCGCCGAAG GCTCGGCGTT TCTGGATCGG GCCCGCGAGC TGATCGACAG CCACGATCAC
GCGGTGGCGG GCGAGCGCAC GATCATTCAG CCGCTGCGGC TTGGTATCAG CGACCACGTC
GCCGGCCCCG ATCTGGTGCC GCTGCTGGCG AGGCTCGGCC GCGGCCGCTC CGACTTGCGG
ATCGAAGTCA GCATCGGGTT CTCGCGTGAC CTGCTCGACA CTTTCGATCG CGCCGAACTC
GATGCGATCT GCATCCGCGA GAGCGCCGGG CGGCGCGGCG GTGAAACCTT GCTCCGCGAC
GAGTTCGGCT GGTTCGCGGC CTCCGATTTC GACCCGGTGC ACGGCGCACC CATTCCGCTT
GCCTCGCTCG CCGCACCTTG CGGCGTGCGA GCGACCGCAG TGCGGGCGCT CGACAAGGCG
AAAGTGCCGT GGACAGAGGT GTTCGTGGGC GGCGGCGTCA GCGCGGTGGT CGCCGCCGCA
CTTGCCGGCC TCGCCGTCGC GCCGCTGGCT AAACGCATTG CGCCGCCGGG GCTGATCGAG
ATCGGCGGGA AACTGAAGCT GCCGCGCCTG CCGGTTTCGC CGGTGGTGCT GCATTCCCGC
GTCAGCGATG CGAGCCGCCG CGCGGCGCTG CGGACTCTGG CGGCGGCGTT CAGGCAGATC
GCAGGCTGA
|
|---|
| Protein sequence | MTDLDIAAVR AFVRVAELRS FTRAAEALGT TQAAISMRLQ RLEALLERRL LERSPRSVGL
TAEGSAFLDR ARELIDSHDH AVAGERTIIQ PLRLGISDHV AGPDLVPLLA RLGRGRSDLR
IEVSIGFSRD LLDTFDRAEL DAICIRESAG RRGGETLLRD EFGWFAASDF DPVHGAPIPL
ASLAAPCGVR ATAVRALDKA KVPWTEVFVG GGVSAVVAAA LAGLAVAPLA KRIAPPGLIE
IGGKLKLPRL PVSPVVLHSR VSDASRRAAL RTLAAAFRQI AG
|
|---|
| |