Gene Rpal_3402 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_3402 
Symbol 
ID6411076 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand- 
Start bp3640139 
End bp3640792 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content72% 
IMG OID642713282 
Productprotein of unknown function UPF0126 
Protein accessionYP_001992379 
Protein GI192291774 
COG category[S] Function unknown 
COG ID[COG2860] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.525112 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATAAGC TTCCGATCGT TCTCGATCTG GCGGGAACTT TCGTGTTCGC ACTCAGCGGC 
GCGGTGGCCG GGGCGCGGCG GCGGCTCGAT CTGTTCGGCG TGCTGGTGCT GGCGTTCGCG 
GCCGGCAATG CCGGCGGCAT CACCCGCGAC GTGCTGATCG GTGCGGTGCC GCCGGTCGCG 
GTGGCGGACT GGCGCTATCT CGGGGTGTCG CTGCTGGCCG GCCTCGTCAC GTTCTACCTG 
GTGCCGGTGG TGGTGCGGAT GCGCAGCGCG ATCCTGATGC TCGACGCCGC CGGGCTGGCG 
CTGTTCGCAG TGACCGGCGC CAGCAAGGCG TTGGCGCACG GGCTCAGCCC GGTGACGGCG 
GTCGCGCTCG GCGTGGTCAC CGGGATCGGC GGCGGCATGG CGCGCGACCT GCTACTCGCT 
GAGATCCCGA CCGTGCTGCG CGCCGAGCTG TACGCGGTCG CGGCGCTGAT CGCGGCGGCG 
ATCGTGGTGG TCGGGCAGAT GCTGCAGCTC CCCGCAGCAC CGATCACCGC GGCCGCCTTG 
CTGGCCTGCT TTGCGCTTCG CGTCACTGCG ATCCGCCGCG GCTGGCGGCT GCCGGTGGCG 
AAGCTCGATG AGGCGGGCGA CCCGGTCAAG CCGCCGACAC AGGACGGCGG TTAG
 
Protein sequence
MDKLPIVLDL AGTFVFALSG AVAGARRRLD LFGVLVLAFA AGNAGGITRD VLIGAVPPVA 
VADWRYLGVS LLAGLVTFYL VPVVVRMRSA ILMLDAAGLA LFAVTGASKA LAHGLSPVTA 
VALGVVTGIG GGMARDLLLA EIPTVLRAEL YAVAALIAAA IVVVGQMLQL PAAPITAAAL 
LACFALRVTA IRRGWRLPVA KLDEAGDPVK PPTQDGG