| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3391 |
|---|
| Symbol | |
|---|
| ID | 6411065 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 3629886 |
|---|
| End bp | 3631520 |
|---|
| Gene Length | 1635 bp |
|---|
| Protein Length | 544 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642713271 |
|---|
| Product | Mu-like prophage FluMu protein GP28 |
|---|
| Protein accession | YP_001992368 |
|---|
| Protein GI | 192291763 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4373] Mu-like prophage FluMu protein gp28 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.50016 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACCGATC CGCGTGCGAT CAGCGAGGCG GATTGGGCCG AGGCGCGGCG CGCCGGCATG
GCGTCGGCCG CCCGGATCTT CGCCGATCGC GGCAGCATCG AAGACGTCCT GATCGGCTAT
CAGAAGCGCC TGCTCGCCTC GACGGCGCTG CACCAGGTCA CGCTGTGCGA GAAGAGCCGG
CGCATCGGTG CGACCTGGGC GGTGGCGGCC GACGCCGTGC TGACCTCGGC GGCGACCAAG
GCCGCCGGCG GCATGGATAC GTTCTACATC GGCTACAACC TCGACATGGC GCGCGAGTTC
ATCGACACCT GCGCCATGTG GGCCCGCTCG TTCAACGAGG CGGCGCCGGT CGTCAATGAG
TTCATGTTCG ACGACGGCAA CCCCGATCGC GCCATCAAGG CGTTCCGGAT CGCGTTCGCC
TCCGGCTTCG AGATCGTGGC GCTCGCCTCG CGCCCGCGCA GCCTCCGCGG CCGGCAGGGT
TACGTGATCA TCGACGAAGC CGCATTCCAC GACGATCTCG CCGGCGTCAT GAAGGCGGCG
ATTGCGCTGC TGATGTGGGG TGGCAAGGTG CTGGTGATCT CGACCCACCT CGGCGCCGAG
AATGCGTTCG CCAAGCTGAT CGACGACGCC CGCGGCGGGC GCAACCCGTA TCATGTCGAG
CGGTTCACCT TCGACGACGC GCTCAACGAT GGGCTGTATC AGCGCATCTG TCTGGTCACC
GGCAAGGAGT GGACGCCGGA GGGCGAAGCC AAGTGGCGCG CCGGCATCAT CGCGTCTTAC
GGCGAGGATG CCGACGAAGA GCTGTTCTGT GTGCCGAGCA AGGGCGGCGG GGTGTATTTC
CCGCGACCGC TGATCGAGGC CCGGATGCTG CCGGATCTGC CGGTGGTGCG GCTGGAGCGC
AACAGCGCCT TTACGTTCCT TCCCAAGGAG CAGCGCGAGG CGGATATCGA AGCGTGGTGC
GAAGAGCATC TGAAGCCGTT GCTTGACGCG CTCGATCCCG AACGCCAGCA CGGCTTCGGC
CAGGACTTCG CCCGCACGCT CGACCTGTCG GTGATCGCAC CGATCGCGAT CGGCAAGACG
CTGAAGCGCA CCGTGCCGTT CAGTGTCGAG ATGCGCAACA TCCCGTTCGA ACAGCAGCGC
CAGGTGCTGT TCTACGTCTG CGATCGGCTG CCGCGGTTCG TCGGCGGCAA GATGGACGCA
AGCGGCAACG GCGCCTATCT CGCCGAGGTC GCGGCGCAGC GCTACGGCCA GCTCCGCGTC
GAGCAGGTCA AGCTGACGGC CGAGTGGTAT CTCGACAATT TCCAGCCGCT GAAAACCGCC
TTTGAAGACG GCATGATTGC TATCCCGCAG CACGCCGACC TGATCGACGA TCTCGGCATC
GTCCGCAAAG AGCGCGGCAT TCCGCGTATC CCGGACATCC GCACCAAGGC GGCCGACGGC
AGCGGCAAGC GTCACGGCGA CTTCGCGATC GCGCTGGTGC TGGCCTATGC GCAGACGCGC
AGCAAGCTGG TCGAGTTCGG CTACCGCGGC GCCGGAGATA GCGCTGCCAG CGGCGACGGG
CCGCCCGACG ATCAAGACGA CGCGCGCGAC TGGTGGCGGC AGCCGCTGGG CGCGGGACTG
AGAGGTGGAC TGTGA
|
|---|
| Protein sequence | MTDPRAISEA DWAEARRAGM ASAARIFADR GSIEDVLIGY QKRLLASTAL HQVTLCEKSR
RIGATWAVAA DAVLTSAATK AAGGMDTFYI GYNLDMAREF IDTCAMWARS FNEAAPVVNE
FMFDDGNPDR AIKAFRIAFA SGFEIVALAS RPRSLRGRQG YVIIDEAAFH DDLAGVMKAA
IALLMWGGKV LVISTHLGAE NAFAKLIDDA RGGRNPYHVE RFTFDDALND GLYQRICLVT
GKEWTPEGEA KWRAGIIASY GEDADEELFC VPSKGGGVYF PRPLIEARML PDLPVVRLER
NSAFTFLPKE QREADIEAWC EEHLKPLLDA LDPERQHGFG QDFARTLDLS VIAPIAIGKT
LKRTVPFSVE MRNIPFEQQR QVLFYVCDRL PRFVGGKMDA SGNGAYLAEV AAQRYGQLRV
EQVKLTAEWY LDNFQPLKTA FEDGMIAIPQ HADLIDDLGI VRKERGIPRI PDIRTKAADG
SGKRHGDFAI ALVLAYAQTR SKLVEFGYRG AGDSAASGDG PPDDQDDARD WWRQPLGAGL
RGGL
|
|---|
| |