| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3358 |
|---|
| Symbol | |
|---|
| ID | 6411032 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 3612762 |
|---|
| End bp | 3613868 |
|---|
| Gene Length | 1107 bp |
|---|
| Protein Length | 368 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642713238 |
|---|
| Product | Mu-like prophage I protein-like protein |
|---|
| Protein accession | YP_001992335 |
|---|
| Protein GI | 192291730 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4388] Mu-like prophage I protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGGAC ACCAATCCAA ACCAGTTTTG AATGTGGCGC GCGGCGTCGG TCAGCCGATC
GCGCTGAACG CCGACGGCTC GGCGCCGGAA TGGATCATGC TGATCCCGGC CGGCGACGGC
GGTGTGATCC ACACCGTCGA TGGCCGTGGT CCGTATCGCG TCGCAGATCC GGCGGCGCTC
GCGGCGCAGA GCCTGGCGGC GGTCGGTGGC CGCGCGCCGC TCGACGAGAA CCATGCGACG
GATCTCGCTG CGCCGAATGG CGAGCCGTCG CCGGCGCGCG GCTGGATCGT CGGCGCCGAG
GCGCGTGACG GCGCCATCTG GGGGCGTATC GACTGGAACG CATCCGGCGC GGCGCTGATG
GCGGATCGTG CCTACCGGTT CATCTCTCCC GTCTTCACCC ACGACAAGGC CGGCAACGTG
CTGACGCTGC TGCGTGCCTC TCTGACCAAC GTCCCAAACC TGCGCGGCAT GGCCGCTCTG
CACCAACAGG AGAATGCAAT GGATCTGCTC GCTCAGCTGC GCGCGCTGCT CGGCCTCGAC
GACACTGCGG ACGAAGCTGC GGTGATCGCC AAGATCAAGG ATCTGAAGGG CGGCGGCGAT
GCAACCGCGA TGAACGCGGC TGTTAGCAAG GCGCTCAACG CCGCGCTGTC GCCGATCGCG
GCGGTCGTCG GCCTCGCTGC CGACGCCGAT GCCCAGGCGA TTGCGCAGGC AGTGTCGAAG
GCGGCGGCGC CCGAGGGTAA TCCGATCGTC AAGTCGCTGC AGTCCGAACT GGCGACCGTC
ACCACAAAGC TCAACGATCT GCTCGGCAGC GCCGCCAAGG AGAAGGCGAC CGCTTTCGTC
GATGGCGCGA TCCGGGATCT GCGCGTCGGC GTGAAGCCGC TGCGCGAGCA CTACATCGCG
CGCCACATGG CAGACCCCGC CGCGGTCGAG AAGGAAATCA ATTCATTCCC GAAACTCGGC
GAGTCCGGCC AGACGCTGTT GCCGACCGAT CCGCCGAAGG ACGGCCAGGT CTCGCTCAAT
GCCGAGCAGC TGACTGCCGC CAAGGTGCTG GGCATCAAGC CCGAGGACTA CGCCAAGACG
CTGGCGGCCG AACGCGCCGC AAGCTGA
|
|---|
| Protein sequence | MSGHQSKPVL NVARGVGQPI ALNADGSAPE WIMLIPAGDG GVIHTVDGRG PYRVADPAAL
AAQSLAAVGG RAPLDENHAT DLAAPNGEPS PARGWIVGAE ARDGAIWGRI DWNASGAALM
ADRAYRFISP VFTHDKAGNV LTLLRASLTN VPNLRGMAAL HQQENAMDLL AQLRALLGLD
DTADEAAVIA KIKDLKGGGD ATAMNAAVSK ALNAALSPIA AVVGLAADAD AQAIAQAVSK
AAAPEGNPIV KSLQSELATV TTKLNDLLGS AAKEKATAFV DGAIRDLRVG VKPLREHYIA
RHMADPAAVE KEINSFPKLG ESGQTLLPTD PPKDGQVSLN AEQLTAAKVL GIKPEDYAKT
LAAERAAS
|
|---|
| |