| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3212 |
|---|
| Symbol | |
|---|
| ID | 6410882 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 3459218 |
|---|
| End bp | 3460360 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642713089 |
|---|
| Product | L-carnitine dehydratase/bile acid-inducible protein F |
|---|
| Protein accession | YP_001992190 |
|---|
| Protein GI | 192291585 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGTGGAC CGCTCGCCGG CATCAAAGTG ATCGAGATCG CACAGGCGAT CGCCGGGCCG
ATGGCCGGTA TGATCCTCGG CGATATGGGA GCCGAGGTGA TCAAGGTCGA GAAGCACGAC
GGCGGCGACG ATGCTCGGCA TTGGGGCCCG CCCTTCGTCG ACGGCGACTC CCTGCTGTTT
CACACCTACA ACCGCAACAA GCGCTCGGTG ACGCTGGACA TCAAGAACCC GGACGATGTC
GCGCGGCTCA AACAGCTTGT CCAGGATGCG GACATCCTGA TTCAGAACCT GCGCTCGGGC
GTGGTCGCTT CGTGCGGCAT CGGACCCGAC GTGATGTGCG CGGTCAATCC GCGGCTGATC
TATTGCTCGG TGTGGGCGTT CGGCAAAGCC GGTCCGCTGA GCAAGGAGCC GGGCTTCGAT
CCGCTGCTGC AGGCCTATGG CGGGGTGATG TCGCTCACCG GCGGTCCCGA GCATCCGCCG
ACCTTCTGCG CGCCGCCGAT CAACGATCGC GCCACCGCGC AGTGGTGCGT GATCGGCGCG
CTGGCAGCGC TGCAGCAGCG CCACGTCACC GGCAAGGGTT GCGTGATCGA TACCTCGCTG
TTCGACACGG CAGTCGGCTG GGTCGACATG TCGCTCAGCG GCTACCTGCT CGACGGCGAG
CCGCCGGTGC GCCATGGCAC CGCCAGCGGC ACGCTGGCGC CGTATCAGGT GTTCGAGACC
GCTGACCGTC CGATTGTGAT CGCCGCCGGC AACGACCGGC TGTTCGCGCG CTGTGCCGAT
GTGCTCGGCC ATCCGGAGTG GAGCACCGAC CATCGCTTTG CGCGGGTGCG CGACCGGCAG
GCGCATCGCC CCGTCCTGAT CCCGCTGATG CAGGAGGTGC TGAGGACCCG CGGCGCAACC
GATTGGCTCG CTGCCTTCAA AAGCGCGGGC GTGCCGGTGA GTCCGGTCAA TGACATCGCC
GAGCTTGCCG CCACCGAACA GCTCGCCGCG GCCGATCTGT TGCGCACGAT GCCGGACACC
GGCCTCAAGG TCGCCGGCCT GCCGATCCTG TTCGACGGCC AGCGGCCAGA TCCGGAGCTC
GCCACGCCCA AGCTCGGCGC ACACAACCAT GAGGTGCTGG GAAACCGTGC CGCGGCCGAA
TAG
|
|---|
| Protein sequence | MGGPLAGIKV IEIAQAIAGP MAGMILGDMG AEVIKVEKHD GGDDARHWGP PFVDGDSLLF
HTYNRNKRSV TLDIKNPDDV ARLKQLVQDA DILIQNLRSG VVASCGIGPD VMCAVNPRLI
YCSVWAFGKA GPLSKEPGFD PLLQAYGGVM SLTGGPEHPP TFCAPPINDR ATAQWCVIGA
LAALQQRHVT GKGCVIDTSL FDTAVGWVDM SLSGYLLDGE PPVRHGTASG TLAPYQVFET
ADRPIVIAAG NDRLFARCAD VLGHPEWSTD HRFARVRDRQ AHRPVLIPLM QEVLRTRGAT
DWLAAFKSAG VPVSPVNDIA ELAATEQLAA ADLLRTMPDT GLKVAGLPIL FDGQRPDPEL
ATPKLGAHNH EVLGNRAAAE
|
|---|
| |