Gene Rpal_3098 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_3098 
Symbol 
ID6410769 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand- 
Start bp3343003 
End bp3343680 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content65% 
IMG OID642712978 
Producttranscriptional regulator, TetR family 
Protein accessionYP_001992079 
Protein GI192291474 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.243755 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGCTAT CGACGAGCAC TCTGGAATCC CGGCGGCGCG GGCTGGTGAC AGCCGCGCAC 
GCCTTGATCC GCGAATCCGG CGGTGCCGGG TTTTCGATGA TTCAGCTTGC CAAGCGTGCG 
GGAGTGAGCC CGGCGACGCC CTACAATCTG GTCGGGACAA AGGCCGACTT GTTGCGGCTC 
GTCGTCCGCG ACGAGTTCGC CGCGTTCGAA ACCCGCCTCG CCACCCGGCC TCCGGGATCG 
CCGCTCGCGC AGCTCGAGGC GGCAATTGAT CTGGTGGTGA AGCACTATTG CGCAGAACCG 
GCGTTCTATC GCGGTCTCTA CGCTGCGATG CAGGGCGAGC ACGCTGCCGA ACTCCGCGGC 
ATGATGCTCG CCGAAGGGCA GCAATTGTGG TGCGCGATGG TGCGCGCCGC AGTGGACGCT 
GGTGAAATCG AGCGCGTCGT CGACGATGAA GCCTTCACCG AGGTGATGCT GCGCGCCATG 
GCCTCAACCA CGGATGCCTG GCTGGCCGTG AACTGGAGCA GGAAGCGCTT CGCCCAGGAG 
ATGCATTTGG CGACGCGCCT GCTGCTACTC GGCGTCGTCA CCAAAACGGC TCGCAGCCGG 
ATTGTTGCTG AATTCCCATC ATCACGTCGA ACCGGTGCGC GAAAGCGTGC GCGAGCGAGC 
GGGACTGCCA AGCCGTAG
 
Protein sequence
MTLSTSTLES RRRGLVTAAH ALIRESGGAG FSMIQLAKRA GVSPATPYNL VGTKADLLRL 
VVRDEFAAFE TRLATRPPGS PLAQLEAAID LVVKHYCAEP AFYRGLYAAM QGEHAAELRG 
MMLAEGQQLW CAMVRAAVDA GEIERVVDDE AFTEVMLRAM ASTTDAWLAV NWSRKRFAQE 
MHLATRLLLL GVVTKTARSR IVAEFPSSRR TGARKRARAS GTAKP