Gene Rpal_3009 details

Gene Information

• Locus tag: Rpal_3009
• Symbol: nusB
• ID: 6410679
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: +
• Start bp: 3274794
• End bp: 3275318
• Gene Length: 525 bp
• Protein Length: 174 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 642712888
• Product: transcription antitermination protein NusB
• Protein accession: YP_001991990
• Protein GI: 192291385
• COG category: [K] Transcription
• COG ID: [COG0781] Transcription termination factor
• TIGRFAM ID: [TIGR01951] transcription antitermination factor NusB

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 0.802222
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCGAGA TCAACAAACC CGCGTTCAAG AAACCCGATC TTAAAAAGAT GACGCCGAAA 
GGCGAGCGCA AGGCGAACCG GCGCGGCGCG GCGCGGCTCG CCGCTGTGCA GGCGCTGTAC 
CAGATGGACA TCGGTGGCGC CGGGATCAAC GAAACCTTCG CCGAGTTCGA GAGCTTCTGG 
ATCGGCAACG AGGTCGAGGG CGAGCAGTAT CTGCCGGCCG AAGCCGCGTT CTTCCGCGAT 
ATCGTCGCCG GCGTGGTGCG CGAGCAGAAG CAGATCGATC CGTTGATCGA CGATCTGCTC 
GCCCGCGGCT GGCCGCTGGC GCGGATCGAC GCCATCCTGC GCGCGGTGAT GCGGGCAGGG 
GCCTATGAGC TCGAACACCG CAAGGATATC CCGGCGCGCG TCGTCGTCTC CGAATATGTC 
GACGTCGCCC ACGCCTTCGT CGAAAAGGAC GAGACCGGCA TGGTCAACGC CGTGCTCGAC 
CAGATCGCGC GGCGGTTCAG GGCTGAGGAG TTCTCAAAGG GATAG 

 

Protein sequence

MAEINKPAFK KPDLKKMTPK GERKANRRGA ARLAAVQALY QMDIGGAGIN ETFAEFESFW 
IGNEVEGEQY LPAEAAFFRD IVAGVVREQK QIDPLIDDLL ARGWPLARID AILRAVMRAG 
AYELEHRKDI PARVVVSEYV DVAHAFVEKD ETGMVNAVLD QIARRFRAEE FSKG