Gene Rpal_3007 details

Gene Information

• Locus tag: Rpal_3007
• ID: 6410677
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: +
• Start bp: 3273559
• End bp: 3274167
• Gene Length: 609 bp
• Protein Length: 202 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 642712886
• Product: riboflavin synthase subunit alpha
• Protein accession: YP_001991988
• Protein GI: 192291383
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0307] Riboflavin synthase alpha chain
• TIGRFAM ID: [TIGR00187] riboflavin synthase, alpha subunit

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 0.550528
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTCACCG GCATCGTCAC CGACATCGGC GAGATCGAGA CCGTCAAGCC GGTCGCGCAG 
GGCCAATTGC ACCGGCTGCG GATCCGCTGC GCCTACGACC AGACGACCAT CGCCGACGGC 
GCTTCGATTG CCTCGAACGG CATCTGCATG ACCGTGGTCG GCTCCGGCAC CGCAGGCGGC 
AAGACCTGGT ACGAGGTCGA TGCCGGCGCC GAGACACTGG CCAAGACCAC GGCGAAAGCC 
TGGACCGCCG GCACCCGGCT CAACCTCGAG CGCGCGCTGA AGATCGGCGA CGAGCTCGGC 
GGCCACATCG TCACCGGCCA TGTCGACGGC ATCGCCAAGG TGGTGGCGCG CGAGGAACTG 
CCCGACATGG CGCGGTTCAC GCTGGAGACC AGCCGCGAGC TGGCGCGGTT CATCGCGCCG 
AAGGGCTCGG TGACGCTCGA CGGCACCTCG CTGACGGTGA ACACCGTCGA GGACACCAAA 
TTCTCGGTGC TGATCATCCC GCACACGCTG TCGGCGACCA TTTTGGGCGG CTGGCAGGTC 
GGCAGCGAGG TCAATATCGA GGTCGACCTG ATGGCGCGCT ATGCGGCGCG CCTCAGCGAG 
ATGAAATAG 

 

Protein sequence

MFTGIVTDIG EIETVKPVAQ GQLHRLRIRC AYDQTTIADG ASIASNGICM TVVGSGTAGG 
KTWYEVDAGA ETLAKTTAKA WTAGTRLNLE RALKIGDELG GHIVTGHVDG IAKVVAREEL 
PDMARFTLET SRELARFIAP KGSVTLDGTS LTVNTVEDTK FSVLIIPHTL SATILGGWQV 
GSEVNIEVDL MARYAARLSE MK