| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2914 |
|---|
| Symbol | |
|---|
| ID | 6410583 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 3180627 |
|---|
| End bp | 3181517 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642712794 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | YP_001991897 |
|---|
| Protein GI | 192291292 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0105427 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCGAAC GCGACGAGCC CCCATTGACC TCAGTGCGAG CCTTCGAAGC TGTCGCACGG
CTCGGCGGCG CCACCGCTGC CGCCCGTGAG CTGGGGGTTT CGCCTTCGGC GATCAGCCAT
CAACTTGCCG TGCTCGATGA CTTCATGGGG CAGCCGCTCA CGCGGCGTCA GGGGCGTGGC
CTCGTCCTGA CCGACGCAGG TCGTGAGTAT TTTCGCTCGG TTCGCACCGC GTTCGCCGTC
CTACGCGACG CAACCGATCA ACTTCGGGAG GGCAGCCGGA GTACGCAGGT TCGGCTCGGC
GTCATCCCGC TGTTCGCCCG GGCCTGGCTG TTCCGTCACA TCCATGAGTT TTTGGATCGG
AATCCAGACA TCGATCTAAA CATCTCCTAC ACCCACCATC GCAACTACGT CAGCGATTCA
GCGGATCTGT CGGTTCGGTT CGGCGAGGGC AGTTGGAAGG GCTACAAGGC TCATCGGATT
TTATCCGGCG CAATCGCGCC GTATTGCAGC CGGGCGTTCC TGGCTCGACA TCGGGAAGCG
GCAACCGATC CGAAATTGCT TCAGAACTAT GCTCTGATTC ACGATCAGGA CTTCGGCGGC
TGGCAGCAAT GGTGGGATCT GCACAACGTC GAGGGTGAGC CAAGCACCGG GCTGCTGGTG
GAGGACGGCA ATCTCGCCTT GCAGGCGGCG CTGGATGGCC TGGGCATCGC TTTGCTGCGT
CCCTCGCTCG TCGATGTCTT CGTCGACGAA GGCGGGCTGT CACGCCTCTT CGACCATCAG
CTTGAAGATG GCCGAGACTA TTACCTCTGT CACCTCGTTG AGCAGCCGTT GTCCGAGGCA
GAAGAACGCC TTGTCAGTTG GCTTATCGAT CGTTGTCGGC ATTCCAGCTA G
|
|---|
| Protein sequence | MIERDEPPLT SVRAFEAVAR LGGATAAARE LGVSPSAISH QLAVLDDFMG QPLTRRQGRG
LVLTDAGREY FRSVRTAFAV LRDATDQLRE GSRSTQVRLG VIPLFARAWL FRHIHEFLDR
NPDIDLNISY THHRNYVSDS ADLSVRFGEG SWKGYKAHRI LSGAIAPYCS RAFLARHREA
ATDPKLLQNY ALIHDQDFGG WQQWWDLHNV EGEPSTGLLV EDGNLALQAA LDGLGIALLR
PSLVDVFVDE GGLSRLFDHQ LEDGRDYYLC HLVEQPLSEA EERLVSWLID RCRHSS
|
|---|
| |