Gene Rpal_2709 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_2709 
Symbol 
ID6410373 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand- 
Start bp2941289 
End bp2941960 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content69% 
IMG OID642712585 
Producthypothetical protein 
Protein accessionYP_001991693 
Protein GI192291088 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0421] Spermidine synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.388652 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCTTCCCT GGATTCAGTT GGCCACCGCG AAAGTACCCG GCGGCGGCGA ATTGCGGCTG 
ATGCGGCGCG GCGAGGAATT CTCGATCCGG CTCGACGCCA ACGAGCTGAT GAACAGCCGG 
CTCGGCGGCT CCGAGGAGGC GCTCGCCACC CTCGCCTGTC AGAAGCTGGC AGGCCGCCCT 
CGTCCGCGCG TCCTGGTCGG CGGGCTCGGT ATGGGCTTCA CGCTGCGCGC CGCGCTGAAA 
GTGTTCGGCA CCGACGCCAC GATCGAGGTC GCCGAACTGG TGCCAGAGGT GATCGACTGG 
GGCCGCGGCG AGATGGCCGG GCTTTTCGGC GTCAGCCTCA CCGATCCCCG CGTCAGCATC 
CTGCAGCGCG ACGTCGGTGA GCTGATCCGC GCCGGCGCGG GGCGCTACGA TGCGATCCTG 
CTCGACGTCG ACAACGGCCC CGAAGGACTG TCGCGCCCTG CAAACGACCA GCTTTACGAC 
AGCCGCGGCC TGTCCGATGC CCGCGCGGCG TTGCGCGGCG GCGGTGTGCT GGCGGTGTGG 
TCGTCGGGCC CCGATGACAG CTTCACCAAG CGGCTGCGGC GCAGCGATTT CGTCGTCAAC 
GAAGTCCCGG TACGTGCGGT CGGCAAGCGC ACCGGCTCGC GGCATTGGAT CTGGCTCGCG 
GTCAAAACCT GA
 
Protein sequence
MLPWIQLATA KVPGGGELRL MRRGEEFSIR LDANELMNSR LGGSEEALAT LACQKLAGRP 
RPRVLVGGLG MGFTLRAALK VFGTDATIEV AELVPEVIDW GRGEMAGLFG VSLTDPRVSI 
LQRDVGELIR AGAGRYDAIL LDVDNGPEGL SRPANDQLYD SRGLSDARAA LRGGGVLAVW 
SSGPDDSFTK RLRRSDFVVN EVPVRAVGKR TGSRHWIWLA VKT