| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2086 |
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| Symbol | |
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| ID | 6409746 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 2258799 |
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| End bp | 2260442 |
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| Gene Length | 1644 bp |
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| Protein Length | 547 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642711971 |
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| Product | major facilitator superfamily MFS_1 |
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| Protein accession | YP_001991083 |
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| Protein GI | 192290478 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily
[TIGR00880] Multidrug resistance protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.389714 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCACTGGC GAGTTTCCCC GCATCGTTTC AGCCCGACGA GAATCCGCGC CCGTATGAGC
ATGTCTGAAC GCCAGAGCCG CACGTCTGCG GGGGCGACCC ATCATCTGCT GTCCGACGAA
TCCGCCGCAG AGCTCTCCAG CATTCCGACC GAAGTGATCA ATCTCGGCGA CGCGCCGCCG
CTGGCGCCCG CCGGTGCGCT GACGCAGGGC GAAGTTCGCG CGATCTTGTT GAGCCTTCTG
CTGGCGATGT TCCTCGCAGC GCTCGACCAG ACGATCGTCG CCACCGCGCT GCCGACGATC
GGGCGGCAAT TCGGCGATGT CGAAAATTTG TCCTGGGTGA TCACGGCCTA TCTGCTGTCG
TCGACGGCGG TGGCTCCGGT GTTCGGCAGC CTCGCCGACA TCTACGGCCG CCGGGTAATG
ATTATCGTCT CGCTCAGCCT ATTCGTGGCC GGTTCGGTGA TGTGCGCGCT GGCACCGAGT
CTGCTCGTCC TGATCCTCGG TCGCGCTCTG CAGGGGCTGG GTGGCGGCGG CATCATGCCG
ATCGTGCAGA CGGTGATCTC CGACGTCGTC AGTCCGCGCG AACGGGGCCA GTATCAGGCT
TATTTCTCCG GCGTGTGGGT GTCGGCCGGA ATCGGCGGTC CGATCCTCGG CGGCTTCTTC
GCCGAGCATC TGCATTGGTC GATGATCTTC TGGATCAACC TGCCGCTCGC GATCGGGGCG
CTGGCGCTGC TGCTGCCGAA GATGGCGAAG ATCCCGGTGT ATCACCGCCG CCGGAAGGTG
GATTGGCTCG GCGGCGTGCT GCTGATGGCC GCTGCGATGG CGGTGATGCT GGTGCTGACC
TGGGGAGGCA ATCGCTTCGC CTGGCTGTCG CCGACGATCC TGGCGCTGTC GGGCGCGGCG
GTGCTGCTGG CGGCGAGCTT CATCTGGCAC GCGCTACGTG CGCGCGAGCC ATTCCTGCCG
CTGCAATTGA TGAGCGGGAC GGTGGTGCCG TGGGCGATGG CGGGCGGCGC GTTCACCATG
GGGGCGATGA TCGCGCTGAC CGTGCACATG CCGCTGTACT ATGAAGCTGT GTACCATCTG
ACCGCCAGCC AGTCCGGCCT CGCGCTGATT CCGATCGCGG CGATCTCGGT GTTCGGCGCA
GCGTTCACAG GCCGGGCGAT GGTGCATGTC GAGCGCTACA AGCGGATCGC GATTCTTGGT
ACCGGCTTTG CGGCGCTGAT GGCATTGGCC ATCGCGCTGT TGACGCCGCT GCCGCTGTGG
CTGTTTTTGA CCCTGCTATC GCTGTGTTCG CTTGGCCTCG GCACGGTGTT TCCGGTCAGC
GTGGTGTCGA TCCAGAACGC GGTGCCGCGG CCGCAGATCG GCACCGCGAC CGGCGCGATG
AACTTCTTCC GGGCGCTGAT GGCCTCGTTC ACGGTGGCGG CGTTCACGGC GATCCTGCTG
ATCGCGCTCG GTGGCAACGT GCAGCTTGGC GGCGGCGAAC ATCGTCATCT CGTCGGCAGC
GTAGCGGCCG CCGAGATGGT GGCGGGGTTC CGCTGGGTGT TCGGTGCGGC GGCTCTGATG
CTGGCGGCCT CGGCGCTGTG CATCATGGTG ATGGAAGAGC GCAAGCTGGC CGGACCCGAG
CCGACGCTCG CGCTCTCGGA ATAG
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| Protein sequence | MHWRVSPHRF SPTRIRARMS MSERQSRTSA GATHHLLSDE SAAELSSIPT EVINLGDAPP
LAPAGALTQG EVRAILLSLL LAMFLAALDQ TIVATALPTI GRQFGDVENL SWVITAYLLS
STAVAPVFGS LADIYGRRVM IIVSLSLFVA GSVMCALAPS LLVLILGRAL QGLGGGGIMP
IVQTVISDVV SPRERGQYQA YFSGVWVSAG IGGPILGGFF AEHLHWSMIF WINLPLAIGA
LALLLPKMAK IPVYHRRRKV DWLGGVLLMA AAMAVMLVLT WGGNRFAWLS PTILALSGAA
VLLAASFIWH ALRAREPFLP LQLMSGTVVP WAMAGGAFTM GAMIALTVHM PLYYEAVYHL
TASQSGLALI PIAAISVFGA AFTGRAMVHV ERYKRIAILG TGFAALMALA IALLTPLPLW
LFLTLLSLCS LGLGTVFPVS VVSIQNAVPR PQIGTATGAM NFFRALMASF TVAAFTAILL
IALGGNVQLG GGEHRHLVGS VAAAEMVAGF RWVFGAAALM LAASALCIMV MEERKLAGPE
PTLALSE
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