| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2011 |
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| Symbol | |
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| ID | 6409671 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 2180459 |
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| End bp | 2183581 |
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| Gene Length | 3123 bp |
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| Protein Length | 1040 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642711897 |
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| Product | heavy metal efflux pump, CzcA family |
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| Protein accession | YP_001991009 |
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| Protein GI | 192290404 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3696] Putative silver efflux pump |
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| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.742526 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGTCGCC TCGTCGAACT CGCGGTCAAC CGCCGTTTCC TGATGCTCGC GCTGTTCTTG
CTGGTGCTGG CGGGCGGTGT CGCCGCGTTC GAACATCTCA ATATCGAAGC CTATCCTGAT
CCCACGCCGC CGATGGTCGA CATCGTCACC CAGAGCCCCG GGCTCTCGGC GGAGGAGATC
GAGCGCTACA TCACGATCCC AATCGAGACC CAGGTCGCCG GCATCAAGAA CCTGAAGACG
ATCCGGACGA TCTCGCTGTA CGGCCTGTCG GACGTCAAAC TGCAGTTCTC GTTCGACTAC
ACTTATCAGC AGGCGCTGCA GCAGGTGCTC AATCGGCTGT CGCAGCTGCC GCCGCTGCCG
GGCAACGTCC AGCCCGGCAT CTCGCCGCTC AGCCCGATCG GCGAGATCTT CCGCTATCGG
CTCGTCGGCC CGCCCGGCTA CAGCGTGCTT GATCTGAAGA CGCTGCAGGA TTGGGTACTG
CAGCGCCGCT TCCGGGCCAT TCCCGGTGTG ATTGACGTTA CCGGCTGGGG CGGCAAGACC
AAGACTTACG AGGTCCAGGT CGATTTCAAC AAGCTGATCG CCTACGGCCT GACGCTGCCG
CAGGTGCTAC AGGCGGTCTC CAACTCCAAC ATCAATGTCG GCGGCAACAC CGTCGACATT
GGCGCGCAAT CCGCGGTGGT CCGCGGCGTC GGTCTGATCC GTTCCCTCGA CGATCTCGCC
AACACCATGG TGGTGTCGAA CAACGGCAAT CCGGTGTTGG TCAAAGACGT CGCCAAGGTC
AGCGTCGCTG AAAAGCCGCG GCTCGGCATC GCCGGCATCA ACAACGACGA CGATATCGTT
CAGGGCATCG TGCTGATGCG CCGCGGCGAG CAGAGCTCGC CGACGATCGC GCGAGTGGAG
CAGGCGGTCA CCAAGATCAA TGCCTCGGGC GTGCTGCCGC CGGGCGTACG GATCGAGCGG
ATCTACGACC GCAAGGATCT GATCGACACC ACCACCCACA CCGTGCTGCA CAACATGGTG
GTCGGCATCC TGCTGATCGT GCTGCTGCAA TGGATCTTCC TGGGCGACCT GCGCAGCGCG
CTGATCGTCG GAGCGACGAT TCCCTTTGCG CTGTTCTTTG CGGTGATCAT CCTGGTGTTA
CGCGGGGAGT CCGCCAATCT GTTGTCGGTC GGCGCGATCG ACTTCGGGTT GATTGTCGAT
GCCACCGTGA TCATGGTCGA GGCGATCTTC AGACGACTCT CGCACACCAC CGTGCTGTCG
CCCGAAGAGC GCAGCCAGAT CTCCGCCGAC ACCATCATGG GGATGAAGAA GCACGCGATC
CGTTCCGCCG CCGCGGATGT GTCGCGTTCG ATCTTCTTCG CCGCGGCGAT CATCATCGCG
GCATTCCTGC CGTTGTTCAC GCTGTCCGGC GTCGAGGGCA ACATCTTCGG GCCGATGGCG
CGGACCTACG CCTACGCGCT CGCCGGAGGC CTGCTGGCGA CCTTCACGGT GACGCCGGCG
CTCAGCGCCA TCATCCTGCC GCACCATGTC CAGGAGACCG AGACCTGGCT GATGCGGATG
CTGCACAAGG TCTACACGCC GTGGCTCGGC TGGGCGGTGA AGAACCGCCC GGTGGTGATG
GCGGGCGCGG TCGGCTTGGT GTTGACCACC GTGATTGCCA CTCGTTTCCT CGGCCTCGAA
TTCCTGCCGA AGCTGGAAGA GGGCAATCTC TGGATTCGCG CGACGCTGCC ACCGACGATT
TCGCTCACTG AGGGCAACGG CTACGTCAAC GACATGCGCA AGCTGATCGC CAGCTTCCCC
GAGGTCGAGT CGGTGGTGTC GCAGCATGGC CGTCCCGACG ACGGCACCGA CGCCGCCGGC
TTCTTCAACG CCGAGTTCTT CGCGCCGCTG AAGCCTGCCT CGCAATGGCC CGGCAGCCAC
GACAAGGACG AACTGACCGC GCGGATGTTG AAGCAGCTGC AGGCGAAATT CCCCGGCGTC
GAGTTCAACT TCTCGCAGTA TTTGCAGGAC AACGTCTCCG AAGCCGTGTC CGGGGTGAAG
GGCGAGAATT CGATCAAGCT GTACGGCAAC GATCTGCAGG CGCTCACCGA CACCGCCAAC
AAGATCAAGG CGGTGCTGTC GACGGTGCAG GGCGTGCAGG ACCTCGCGGT GTTCACCTCG
CTCGGCCAGC CGACCATCCA GATCGACGTC AACCGCGCCC GTGCGGCGCG CTACGGGCTG
ACGCCCGGCG ACATCAACGC CACCATCAAG GTGGCGATCG GCGGCGACAG CGCCGGCGAT
CTGTACGAGC CGGGCAGCGA CCGGCATTTC CCGATCATCG TCCGTCTGGC GCCGGAGTAT
CGCAAGAGCG CTGAGGCGAT CCACAACCTG CGGATCGGCG TGCAGGGCCC GAACGGCATC
ACCCAGATCC CGCTTAGCGA GCTTGCCGAC ATCCAGCTGG TGTCCGGCGC CGCCTACATC
TATCGCGAGG ACCAGGAGCG CTATCTGCCG ATCAAGTTCT CGGTGCGCGA GCGAGATCTC
GGCAGCGCGA TCCGTGAGGC CCAGGAAAAG GTCAATGCCC AGGTGCAGTT GCCGCCAGGC
TCGCGAATGG AATGGGTCGG CGAATTCGGC AATCTGCAGG ACGCGATTAA GCGGCTGTCG
ATCGTGGTCC CGATCAGCTT AGCGCTGATC GGAGCGCTGC TGTTCTTCAA CTTCGGCTCG
CTCACCGACA CGCTGTTGGC GATGAGCGTG ATCCCGATGG CGATCTTCGG CGGCGTGATG
GGCCTCCTGG TCAGCGGCAT CCCGTTCAGC GTGTCGGCAG CGATCGGCTT CATCGCGCTG
TTCGGTATTG CGGTGATGGA CGGCATCATC ATCCTGTCGC AGTACAATCA GCTGATCGAT
CAGGGGCTCG ACCGGCTGCG CGCGGTAGTC CGCACCGGCG AGCTGCAGCT CCGGCCGGTG
CTGATGACCT GCGTGATCGC CGGCGTCGGC CTGCTACCGG CGGCGATGTC GACCGGAATC
GGCTCGCAGG TGCAGAAGCC GTTGGCGATC GTGGTGGTCA CCGGCATGAT GCTGGCGCCG
GGGGTGATTC TCATCACGCT GCCGGTTCTG ATCTCGTACT TCTCCCGGCG GCGCGCCAAC
TAA
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| Protein sequence | MGRLVELAVN RRFLMLALFL LVLAGGVAAF EHLNIEAYPD PTPPMVDIVT QSPGLSAEEI
ERYITIPIET QVAGIKNLKT IRTISLYGLS DVKLQFSFDY TYQQALQQVL NRLSQLPPLP
GNVQPGISPL SPIGEIFRYR LVGPPGYSVL DLKTLQDWVL QRRFRAIPGV IDVTGWGGKT
KTYEVQVDFN KLIAYGLTLP QVLQAVSNSN INVGGNTVDI GAQSAVVRGV GLIRSLDDLA
NTMVVSNNGN PVLVKDVAKV SVAEKPRLGI AGINNDDDIV QGIVLMRRGE QSSPTIARVE
QAVTKINASG VLPPGVRIER IYDRKDLIDT TTHTVLHNMV VGILLIVLLQ WIFLGDLRSA
LIVGATIPFA LFFAVIILVL RGESANLLSV GAIDFGLIVD ATVIMVEAIF RRLSHTTVLS
PEERSQISAD TIMGMKKHAI RSAAADVSRS IFFAAAIIIA AFLPLFTLSG VEGNIFGPMA
RTYAYALAGG LLATFTVTPA LSAIILPHHV QETETWLMRM LHKVYTPWLG WAVKNRPVVM
AGAVGLVLTT VIATRFLGLE FLPKLEEGNL WIRATLPPTI SLTEGNGYVN DMRKLIASFP
EVESVVSQHG RPDDGTDAAG FFNAEFFAPL KPASQWPGSH DKDELTARML KQLQAKFPGV
EFNFSQYLQD NVSEAVSGVK GENSIKLYGN DLQALTDTAN KIKAVLSTVQ GVQDLAVFTS
LGQPTIQIDV NRARAARYGL TPGDINATIK VAIGGDSAGD LYEPGSDRHF PIIVRLAPEY
RKSAEAIHNL RIGVQGPNGI TQIPLSELAD IQLVSGAAYI YREDQERYLP IKFSVRERDL
GSAIREAQEK VNAQVQLPPG SRMEWVGEFG NLQDAIKRLS IVVPISLALI GALLFFNFGS
LTDTLLAMSV IPMAIFGGVM GLLVSGIPFS VSAAIGFIAL FGIAVMDGII ILSQYNQLID
QGLDRLRAVV RTGELQLRPV LMTCVIAGVG LLPAAMSTGI GSQVQKPLAI VVVTGMMLAP
GVILITLPVL ISYFSRRRAN
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