| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1965 |
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| Symbol | |
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| ID | 6409625 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 2121497 |
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| End bp | 2122369 |
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| Gene Length | 873 bp |
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| Protein Length | 290 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642711851 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001990963 |
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| Protein GI | 192290358 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.215015 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCACAG ATCAGCTTCT CGCCGGCCGT CGCATCCTCG TCACCGGTGG CGGCACCGGC
CTCGGCAAGG CGATGGCGGC GCGCTTCCTG CAGCTCGGCG CCGAAGTGCA CATCTGCGGC
CGCCGCAAGG GCGTGTGCGA CGAGACCGCG ACCGAACTGA TGGATCAGTA CGGCGGCAAG
GTGATGACCT ACGGCGTCGA CATCCGCGAC GCCGCGGCAG TCGACCACAT GGTCGAGACC
ATCTTCGAGA GCGGGCCGCT CACAGACCTG ATCAACAACG CGGCGGGAAA TTTCATCTCG
CGGAGTGAGG ATCTCAGCCC GCGCGGCTTC GACGCCGTCG CCAACATCGT GATGCACGGC
ACGTTCTACG TCACCCACGC GGTCGGCAAG CGCTGGATCG CCGGCGGCCA CCGCGGCAAC
GTGGTGTCGA TCACCACCAC CTGGGTGCGC AACGGCAGCC CCTATGTGGT GCCGTCGGCG
ATGAGCAAGT CGGCGATCCA CGCCATGACG ATGTCGCTCG CCACCGAATG GGGTAAATAC
GGCATCCGTC TCAACACCAT TGCGCCGGGC GAAATTCCGA CCGAGGGCAT GAGCAAGCGG
ATCAAGCCGG GCGACGAAGC CGGCGCACGC ACCATCAAGA TGAACCCGAT GGGCCGCGTC
GGCACCATGG AGGAGTTGCA GAACCTCGCA ACCTTCCTGA TCTCCGGCGG CTGCGACTGG
ATCAGCGGCG AGACCATCGC CATGGACGGC GCCCAGGGCC TCGCGATGGG CGGCAATTTC
TACCAGCTCC GCGACTGGAG CAACGCCGAC TGGGATCAGG CCAAGGCCTC GATCAAAGCC
CAGAACGAAA AGGACCGCGC GCAGCGGGGG TAA
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| Protein sequence | MFTDQLLAGR RILVTGGGTG LGKAMAARFL QLGAEVHICG RRKGVCDETA TELMDQYGGK
VMTYGVDIRD AAAVDHMVET IFESGPLTDL INNAAGNFIS RSEDLSPRGF DAVANIVMHG
TFYVTHAVGK RWIAGGHRGN VVSITTTWVR NGSPYVVPSA MSKSAIHAMT MSLATEWGKY
GIRLNTIAPG EIPTEGMSKR IKPGDEAGAR TIKMNPMGRV GTMEELQNLA TFLISGGCDW
ISGETIAMDG AQGLAMGGNF YQLRDWSNAD WDQAKASIKA QNEKDRAQRG
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