| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1948 |
|---|
| Symbol | |
|---|
| ID | 6409608 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 2101477 |
|---|
| End bp | 2102724 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642711834 |
|---|
| Product | Extracellular ligand-binding receptor |
|---|
| Protein accession | YP_001990946 |
|---|
| Protein GI | 192290341 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.61677 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATCA ATCGCCGTAA CCTCGTTCTC GGCGGCGCGG CCAGCGCCGC TTTGCTGCCG
TTCGCGACGG CAAGGGCCGA GACCAAGGAA GTCGTCATCG GTGTGATCTA TCCGTTGTCG
GGATCGAGCG CCCAGATCGG CGTCGATGCG CAGAAGGCGT TCCAGACCGC GGCCGAACTG
ATCAACAACA AGTACGATTT CGATCTGCCG CTGGCGCGCG GCGAGGGCCT TCCGGGGCTC
GGTGGCGCCA AGGTCCGCCT CGTTTTCGCC GACCATCAGG CCGATCCGCA GAAGGGCCGC
GCCGAGGCTG AGCGACTGAT CACTCAGGAA AAAGTCTGCG CCATCGTCGG CACCTACCAG
AGCGCCGTGG CGGTCACTGT CAGCCAGGTT TGCGAGCGCT ATCAGGTACC GTTCCTGTCG
GCCGACAACT CCTCGCCGAG CCTGCATCGC CGCGGCCTCA AGTATTATTT CCGGCCGGCT
CCGCACGACG AGATGTTCTC GCAGGCGATG TTCGACTTCT TCGACGCCCT GAAGAAGAAG
GGTCAGAAGA TCGAGACGCT GGCGCTGTTC CACGAAGACA CCATCTTCGG CACCGACTCC
TCCAACGCGC AGCTCAAGCT GGCGCAGGAG CGTGGTTACA AGATCGCGGC GGACATCAAG
TACCGCGCCA ACTCGCCGTC GCTGACTGCC GAGGTACAGC AGCTCAAGGC TGCGGACGCC
GACGTGCTGA TGCCGTCGAG CTATACCACC GACGGCATTC TGTTGATCCG CACCATGGGC
GAGCTCGGCT ACAAGGCCAA GAACATCGTG GCGCAGGACG CCGGCTTCTC CGAGAAGGCG
CTGTATGACG CGGTCGGTGA CAAGATCCCG GGCGTGATTT CGCGTGGCTC GTTTTCGATC
GACCTTGCGC AGAAGCGGCC GATGGTCGGC AAGATCAACG ACATGTACAA GGAGAAGTCC
GGCAAGGACT TCAACGATTA CTCGTCGCGG CAGTTCATGG GCCTGATCGT GATGGCCGAC
GCCATCAACC GTGCCAAGTC GACCGACGGC GAGAAGATCC GCGAAGCCCT GGCAGCGACC
GATATGCCGG GCGAGCAGAC CATCATGCCG TGGAGCCGGG TCAAGTTCGA CGAGACAGGC
CAGAACACCT TCGCCGACCC GGTGCTGTTG CAATATGTCG GCGGCAAGTT CGTCACCATT
TTCCCCACTC AGGCCGCGGT CGCCGACGCG ATCTGGCCGA TGCCGTAA
|
|---|
| Protein sequence | MKINRRNLVL GGAASAALLP FATARAETKE VVIGVIYPLS GSSAQIGVDA QKAFQTAAEL
INNKYDFDLP LARGEGLPGL GGAKVRLVFA DHQADPQKGR AEAERLITQE KVCAIVGTYQ
SAVAVTVSQV CERYQVPFLS ADNSSPSLHR RGLKYYFRPA PHDEMFSQAM FDFFDALKKK
GQKIETLALF HEDTIFGTDS SNAQLKLAQE RGYKIAADIK YRANSPSLTA EVQQLKAADA
DVLMPSSYTT DGILLIRTMG ELGYKAKNIV AQDAGFSEKA LYDAVGDKIP GVISRGSFSI
DLAQKRPMVG KINDMYKEKS GKDFNDYSSR QFMGLIVMAD AINRAKSTDG EKIREALAAT
DMPGEQTIMP WSRVKFDETG QNTFADPVLL QYVGGKFVTI FPTQAAVADA IWPMP
|
|---|
| |